Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211471g00038 ATGTGTGTGATTCTAACACTCCCTTCAACCCAAGTTTCTGGTGATAATGGAGACAGTGATGAAGCAAATGCTCTCCTCAAATGGAGATCCACCCTTGATAACCATAGTCAAACTCTCCTATCATCTTGGAACACCACTACTAGTCCATGCAAATTTGAAGGAATTCAATGTGATAATAAGTCAAACTCAGTCTCCACCATAATTCTTGCAAATTATGGACTTCAAGGTACACTCCATGGACTGAACTTTTCTTCATTTCCCAACCTTGTTAGCATAGATATTAACAACAATTCCTTCTATGGTACCATCCCTCCACAAATTTCTAACTTGTCTAGAATTACCTATTTGAACATGTCTTACAATCATTTCAATGGTTCAATTCCTAATGAAATGTGGAAGCTAAGGTCATTACATAAGCTAGATCTTTCAAACTGCATTCTCAGTGGTAACATCTCTGCTAATGTAGCAAACTTGACCAACTTGTCACACCTAGATTTTGGAGGAAATAATCTGGAAGGAGAAATTCCCCAAGAAATTGGTATGTTGAGGAATTTAGAGTATCTAGGAACATCAGGGAATCCTCTTTTAAGAGGTTCAATTCCAAAGGAAATTGGAATGTTAACAAACCTTAGGTTCCTTGATTTATCATATTGTCCTCTCTCTGGCACTATTCCTTCAGAAATTGGAAATTTGACCAATTTGAATTCTCTTTTTTTCATTCAAAACAGCCTCTTTGGTCCAATTCCATCCTCCATTTGGAACTTGACTAGCTTGACTAACCTTTTACTCTCTACCAATAATTTTTCTGGTTCAATCCCAAATTCAGTTGGGAAGTTGGTCAATCTTGAAACCCTTGATCTGTCTCAGACTCTAATGTCTGGTCCTATTCCTGATTCTATTGGAAACTTGACAAAGCTCACCACATTGTACTTGTACCATAGCAAATTCTCAGGAACAATTCCTTCTAGTATAGGAAACTTGGTCAATGTGAATGTTCTTGTCCTTGCAGAGAACAATTTTTCTGGTCCTATTCCTTCAACTTTAGGTAACTTGGTTAGGCTCACTGATCTTCAATTGGCCACAAACAAATTCAATGGTAGCCTCCCAGAGGAAATGAATAATATCATAAACTTGGGAAATTTGCAGCTATCAGAGAACAATTTTGTTGGTAGTTTGCCATCACAAATATGCTTAGGTGGTGCATTAACCAACTTCAGTGCTGATCATAACAGTTTCACTGGTCCAGTACCAAGAACCTTAAAGAATTGCTCTAGTATCCTTAGAATCAGGCTTGATTCAAACCACATTGAAGGCAACATAACAGAAGATTTTGGTGTATATCCGGATTTGGACTACATCAATCTCAGTGGCAACAAGTTTTATGGTCACATTTCTCCAAATTGGGGAAAATGTCCTAAACTTACTTATCTTATAATTGGAAGCAACAATGTCACCGGTGTTATACCGGCGGAACTTGTTGAGGCAACCAATTTAGGTATGCTTGACCTTTCGTCGAATCAGTTGGTTGGAGAAGTTCCCAAGGAACTTGGTAAGATGAAGAAACTAGTCCAAGTGGAGATTGGCAACAACCTTCTTTCAGGAAACATTCCAGCAGAAATTGGACAGCTGCAGAGCCTCGAGATCTTGAATCTTGGAGGAAACGAGTTGAACGGCGCTATACCGAAAGAAGTTGTGGATTTACAGAAGTTAAGGGAGCTGAATTTGAGCAGGAACAAGCTTGATGGAAGCATTCCTTCTGTGTTTGGCCAATCAATGGTATCTCTTGATCTCAGTGGAAATTCACTGGATGGAACAATACCAACAAGCCTTGGAGGGCTACAACACTTGCAAGTGTTGGATTTGTCACATAACAATCTTTCAGGTACTATTCCATCAAAATTCAGCCTGACATTGGAATTTGTGAACATGTCAGATAACCAGCTAGAAGGGCCACTTCCAAATAATCCTGCTTTTCTCAATGCTGATGCATTTAAGAACAACAAAGGCTTGTGTGGGAATCATATCAAGGGAATGGTTGAATGCTCTACCAATCTCAAAAAGAGCAACAAAAAAACCATCCTATTGATATTAATCATCACTTTGGTGACTCTAGCAGTAGTTCTTTGTGGGGTTGGAATTGCAGTGTGTATTCTTTGCAGAAGTAAAAGAAGATTGGGAAACCAAGGTAAAGTCCAAGCCAAAGATGCAAGAATTGAATCACAATTTTCAATATGGAGCTATGATGGGAAAATCATGTTTGAGAACATCATTGATGCTACTAAGAATTTTGATGATTACTATCTCATTGGTGTTGGAAGCCAAGGACATGTTTACAAAGCTGAATTGCCTTCAGGACAAGTTGTTGCTGTGAAGAAGCTCCATAATCTGTTAGTAACTGATGAAGAAGTTTCAAGCACAAAGGCTTTTACAAGTGAGGTTCAAGCATTGACACATATCAAGCACAGGAACATCATAAAGCTCTTTGGATTCTGTTCACATCCACAGTTCTCATTTCTTGTTTATGAGTTCTTGGAAGGTGGGAGCTTGGATCAAATACTGAGCAATGAGGCACATGCTGTTGCATTTGATTGGGAGAAGAGGTTGAATGTTGTTAAGGGCGTGGCGAATGCTTTGTCTTACATGCATCATGATTGTTCGCCTTCTATAGTTCATCGCGATATTTCGAGCAAGAATGTCCTGTTGGATTCAGAGTATGAAGCTCATGTTTCAGATTTTGGGACTGCTAAGTTCATCAAGCCTGGCTCACATAGTTGGACAACATTTGCTGGCACTTTTGGCTATGCTGCTCCAGAACTTGCCCAAACTATGGAAGTGAATGAGAAATGCGATGTATATAGTTTTGGAGTGCTAGCTTTGGAGATCATAATGGGAAAGCACCCTGGAGATCTGATTTCATCATTGATGTCAGCATCAACAGCAGCAATGGTGAATGATTTGTTACTAATTGATCTGTTGGACCAAAGGCTTGCTCATCCGAACCCCAAGAGTGCAATTGTTGAGGAGGTGATCTTGGTTGCAAGGCTGGCTTTCTCTTGCTTGAAAACAAGCCCACATTCTCGACCAACAATGGATCAAGTTTCTAAGGCCCTTGAAATAGGAAGATCAACTTTAGTGGATCAGTTTCCAAATGTTAGACTTGGACAACTACACTGA 3174 0.3948 MCVILTLPSTQVSGDNGDSDEANALLKWRSTLDNHSQTLLSSWNTTTSPCKFEGIQCDNKSNSVSTIILANYGLQGTLHGLNFSSFPNLVSIDINNNSFYGTIPPQISNLSRITYLNMSYNHFNGSIPNEMWKLRSLHKLDLSNCILSGNISANVANLTNLSHLDFGGNNLEGEIPQEIGMLRNLEYLGTSGNPLLRGSIPKEIGMLTNLRFLDLSYCPLSGTIPSEIGNLTNLNSLFFIQNSLFGPIPSSIWNLTSLTNLLLSTNNFSGSIPNSVGKLVNLETLDLSQTLMSGPIPDSIGNLTKLTTLYLYHSKFSGTIPSSIGNLVNVNVLVLAENNFSGPIPSTLGNLVRLTDLQLATNKFNGSLPEEMNNIINLGNLQLSENNFVGSLPSQICLGGALTNFSADHNSFTGPVPRTLKNCSSILRIRLDSNHIEGNITEDFGVYPDLDYINLSGNKFYGHISPNWGKCPKLTYLIIGSNNVTGVIPAELVEATNLGMLDLSSNQLVGEVPKELGKMKKLVQVEIGNNLLSGNIPAEIGQLQSLEILNLGGNELNGAIPKEVVDLQKLRELNLSRNKLDGSIPSVFGQSMVSLDLSGNSLDGTIPTSLGGLQHLQVLDLSHNNLSGTIPSKFSLTLEFVNMSDNQLEGPLPNNPAFLNADAFKNNKGLCGNHIKGMVECSTNLKKSNKKTILLILIITLVTLAVVLCGVGIAVCILCRSKRRLGNQGKVQAKDARIESQFSIWSYDGKIMFENIIDATKNFDDYYLIGVGSQGHVYKAELPSGQVVAVKKLHNLLVTDEEVSSTKAFTSEVQALTHIKHRNIIKLFGFCSHPQFSFLVYEFLEGGSLDQILSNEAHAVAFDWEKRLNVVKGVANALSYMHHDCSPSIVHRDISSKNVLLDSEYEAHVSDFGTAKFIKPGSHSWTTFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPGDLISSLMSASTAAMVNDLLLIDLLDQRLAHPNPKSAIVEEVILVARLAFSCLKTSPHSRPTMDQVSKALEIGRSTLVDQFPNVRLGQLH 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211471g00038 1057 FunFam MDIS1-interacting receptor like kinase 2 844 1043 - -
Stsc211471g00038 1057 SUPERFAMILY Protein kinase-like (PK-like) 743 1038 IPR011009 -
Stsc211471g00038 1057 FunFam Nuclear pore complex protein NUP107 18 171 - -
Stsc211471g00038 1057 ProSiteProfiles Protein kinase domain profile. 763 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211471g00038 1057 Pfam Leucine Rich Repeat 209 231 IPR001611 GO:0005515
Stsc211471g00038 1057 SUPERFAMILY RNI-like 69 372 - -
Stsc211471g00038 1057 PRINTS Leucine-rich repeat signature 592 605 - -
Stsc211471g00038 1057 PRINTS Leucine-rich repeat signature 613 626 - -
Stsc211471g00038 1057 Gene3D Ribonuclease Inhibitor 18 175 IPR032675 -
Stsc211471g00038 1057 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 272 - -
Stsc211471g00038 1057 Gene3D Ribonuclease Inhibitor 375 682 IPR032675 -
Stsc211471g00038 1057 FunFam Leucine-rich repeat receptor protein kinase MSP1 727 843 - -
Stsc211471g00038 1057 ProSitePatterns Tyrosine protein kinases specific active-site signature. 889 901 IPR008266 GO:0004672|GO:0006468
Stsc211471g00038 1057 Pfam Leucine rich repeat N-terminal domain 19 58 IPR013210 -
Stsc211471g00038 1057 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 375 685 - -
Stsc211471g00038 1057 FunFam Leucine-rich receptor-like protein kinase family protein 273 370 - -
Stsc211471g00038 1057 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 402 1038 - -
Stsc211471g00038 1057 Pfam Protein kinase domain 767 1034 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211471g00038 1057 Gene3D Ribonuclease Inhibitor 176 272 IPR032675 -
Stsc211471g00038 1057 Gene3D Ribonuclease Inhibitor 273 374 IPR032675 -
Stsc211471g00038 1057 Gene3D Phosphorylase Kinase; domain 1 725 843 - -
Stsc211471g00038 1057 SMART LRR_typ_2 207 231 IPR003591 -
Stsc211471g00038 1057 SMART LRR_typ_2 255 279 IPR003591 -
Stsc211471g00038 1057 SMART LRR_typ_2 543 566 IPR003591 -
Stsc211471g00038 1057 SMART LRR_typ_2 613 636 IPR003591 -
Stsc211471g00038 1057 SMART LRR_typ_2 303 327 IPR003591 -
Stsc211471g00038 1057 SMART LRR_typ_2 110 134 IPR003591 -
Stsc211471g00038 1057 SMART LRR_typ_2 567 591 IPR003591 -
Stsc211471g00038 1057 SMART LRR_typ_2 158 182 IPR003591 -
Stsc211471g00038 1057 SUPERFAMILY RNI-like 296 647 - -
Stsc211471g00038 1057 Gene3D Transferase(Phosphotransferase) domain 1 844 1047 - -
Stsc211471g00038 1057 ProSiteProfiles Leucine-rich repeat profile. 615 637 IPR001611 GO:0005515
Stsc211471g00038 1057 ProSiteProfiles Leucine-rich repeat profile. 569 591 IPR001611 GO:0005515
Stsc211471g00038 1057 Pfam Leucine rich repeat 592 648 IPR001611 GO:0005515
Stsc211471g00038 1057 Pfam Leucine rich repeat 87 145 IPR001611 GO:0005515
Stsc211471g00038 1057 Pfam Leucine rich repeat 522 580 IPR001611 GO:0005515
Stsc211471g00038 1057 Pfam Leucine rich repeat 449 508 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211471g00038 Stsc-Chr211471 224780 228230 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211471g00038 20 937 Receptor kinase-like Gene Family AT4G08850 44.196 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc211471g00038 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211471g00038 - - gmx:100815688 1193.33