LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211471g00036	ATGGATCTGGGAATTTATGGTGCAGAAAAGGAAAATGTAGTATCAGTGTTCTTGAGCAAAGAGCACAAACCGCAGACTACACGTTCATGGGAGTTTCTTGGACTGAGGAGGAGGAATGGCATGAACACAGCATGGCAGAAAGGGAGATATGGTGAAAATACAATCATAGCTAACATTGATACAGGTGTTTGGCCTGAATCTAAGAGCTTCAGTGACAGAGGAATTGGCCCAGTTCCATCAAAATGGCGTGGAGGTAATGTGTGTCAGATTAGCAAACTCCCTGCTTCAAACAAAACTCCATGCAACAGGAAACTAATTGGAGCAAGATACTTCAGCAAAGGTTATGAGGCAAGCATAGGCAAAATCCCGGCATCACAGCACACAGCACGTGACTTCGAAGGCCATGGGACCCACACTCTGTCAACGGCCGGTGGCAACTTCGTACGCGGCGCAAGCGTTTTCGGCAACGGCAACGGCACCGCAAAGGGTGGATCTCCAAGAGCCAGGGTTGCGGCCTACAAGGTGTGCTGGTCCACCTTAGACGAGACCAGCTGCCATGGCGCAGACGTGTTGTCCGCCATTGACCAAGCCATCAGCGACGGCGTTGACGTCATCTCTGTTTCCGCTGGTGGCAGAACAGAGGTAAACCCTAATGAGATATTCACGGATGAGGTGTCCATAGGTGCGTTCCATGCGCTTTCAAGAAACGTTGTGGTTGTTGCTTCAGCGGGTAATGAGGGACCCACACCTGCAAGTGTTGTCAACGTGGCTCCCTGGCTGTTCACGGTTGCTGCTAGCACCATCGATAGGGACTTCAGCAGTAATATAACTCTCGGTAACAATCAACAAATCACGGGAGCCAGTCTTTTCGTAAATTTACCATCCAGTCAGTCATTTCCCTTGATCCTTGCATCTGATGCTAGATTTGCTAATGCCACAATTCAAAATGCTCAACTTTGTATGCCTGGAACACTTGATCCTGCAAAAGCAAGGGGCAAAGTAGTGATATGCCTTAGAGGTGGGAAAATAAGATCGGTTGCTGAAGGCCAAGAAGCTTTATCTGCAGGTGCAGTTGGAGTGTATATGGAAAACGATGATCAGAGTGGAAAAACAGTTCTAGCTGAGCCTCATGTTTTGTCCACTACAAATGTCCCCAAAACTAATCAGGGAAAAAATGTTCATGATTATTACAACAGTACCGCGAACCCTACTATTAACATGGCTGCAGCAACAACATTGCTTGGAACAAAGCCAGCTCCAGTTATGGCCTCTTTCTCATCAAGAGGTCCAAATCCGATTCAACCATCAATACTCAAGCCTGATATAACTGCACCAGGGGTGAACATACTTGCTTCATATTCCTTAGCAGCAAGTGCATCTAACTTGCCAACAGACACGCGCCGCGGATTTCGTTTCAATGTTCTGCAAGGAACTTCTATGTCATGCCCTCATATCTCTGGTGTTGCCGGTCTTCTCAAAACTCGTCATCCTAATTGGAGTCCTGCAGCTATTAAATCCGCAATCATGACCACTGCATCTACACAAGATAACACCAATGGACCTATTCAAGATGCATTTGATAATACATTAGCTACACCCTTTGCTTATGGTTCAGGACATGTTCAACCAGACTTAGCCATGGACCCTGGACTTGTTTATGACATTACAACTGTTGATTACTTGAACTTCTTATGTGCTTCTGGATACAGTCAAGACCTCATTGCATCACTAAATTCCAACAAGAACTTCATATGCTCCGGATCTCATAGAGTAACAGATCTAAATTACCCTTCAATCACATTGCCAAATCTCGGATCCAACGCCGAGAATGTTACTCGAACGGTTACTAATGTTGGGCCTCCAAGCACATACGTTGCAAATGTACAGTTGCCTGGATTTAACATTGTTGTGGTGCCAAGTTCCTTAAAGTTCAAGAAAGTTGGTGAGAAGAAGAGGTTCCAAGTAATTGTAAAGGCAACAAGTGTGAGTCAGAAAGGGAGTTATCAATTTGGAGAGTTGAAATGGACAAATGGAAACCACATTGTTAGAAGTCCAATTGTTGTGAGGCTCACATCATGA	2079	0.4545	MDLGIYGAEKENVVSVFLSKEHKPQTTRSWEFLGLRRRNGMNTAWQKGRYGENTIIANIDTGVWPESKSFSDRGIGPVPSKWRGGNVCQISKLPASNKTPCNRKLIGARYFSKGYEASIGKIPASQHTARDFEGHGTHTLSTAGGNFVRGASVFGNGNGTAKGGSPRARVAAYKVCWSTLDETSCHGADVLSAIDQAISDGVDVISVSAGGRTEVNPNEIFTDEVSIGAFHALSRNVVVVASAGNEGPTPASVVNVAPWLFTVAASTIDRDFSSNITLGNNQQITGASLFVNLPSSQSFPLILASDARFANATIQNAQLCMPGTLDPAKARGKVVICLRGGKIRSVAEGQEALSAGAVGVYMENDDQSGKTVLAEPHVLSTTNVPKTNQGKNVHDYYNSTANPTINMAAATTLLGTKPAPVMASFSSRGPNPIQPSILKPDITAPGVNILASYSLAASASNLPTDTRRGFRFNVLQGTSMSCPHISGVAGLLKTRHPNWSPAAIKSAIMTTASTQDNTNGPIQDAFDNTLATPFAYGSGHVQPDLAMDPGLVYDITTVDYLNFLCASGYSQDLIASLNSNKNFICSGSHRVTDLNYPSITLPNLGSNAENVTRTVTNVGPPSTYVANVQLPGFNIVVVPSSLKFKKVGEKKRFQVIVKATSVSQKGSYQFGELKWTNGNHIVRSPIVVRLTS	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211471g00036	692	Gene3D	-	564	691	-	-
	Stsc211471g00036	692	Pfam	Fibronectin type-III domain	593	688	IPR041469	-
	Stsc211471g00036	692	CDD	PA_subtilisin_like	275	404	-	-
	Stsc211471g00036	692	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	11	688	IPR045051	-
	Stsc211471g00036	692	Pfam	Subtilase family	51	520	IPR000209	GO:0006508\|GO:0008236
	Stsc211471g00036	692	SUPERFAMILY	Subtilisin-like	25	551	IPR036852	GO:0004252\|GO:0006508
	Stsc211471g00036	692	ProSiteProfiles	Serine proteases, subtilase domain profile.	29	547	-	-
	Stsc211471g00036	692	FunFam	subtilisin-like protease SBT1.5	269	414	-	-
	Stsc211471g00036	692	FunFam	Subtilisin-like protease SBT1.5	53	280	-	-
	Stsc211471g00036	692	CDD	Peptidases_S8_3	22	513	IPR034197	-
	Stsc211471g00036	692	Gene3D	Peptidase S8/S53 domain	54	560	IPR036852	GO:0004252\|GO:0006508
	Stsc211471g00036	692	PRINTS	Subtilisin serine protease family (S8) signature	131	144	IPR015500	-
	Stsc211471g00036	692	PRINTS	Subtilisin serine protease family (S8) signature	476	492	IPR015500	-
	Stsc211471g00036	692	PRINTS	Subtilisin serine protease family (S8) signature	51	70	IPR015500	-
	Stsc211471g00036	692	Gene3D	-	269	414	-	-
	Stsc211471g00036	692	ProSitePatterns	Serine proteases, subtilase family, serine active site.	477	487	IPR023828	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211471g00036	Stsc-Chr211471	217501	220949	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211471g00036	2	690	Subtilisin-like Serine Gene Family	AT2G04160	52.882	0.0	707

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211471g00036	-		-	gmx:100803751	1026.54