Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211471g00013 ATGGCGATGTACGAGCACGACCAGCAGTTCAAGGATAAAGCGCCAATATGGAGAGCCGCTCTGCGCGATGCAGCCAATTTATCGGGCTTGCATTTCAAAGGGGATGAGTTTGAATATGAATTTATTGAGAGGGTTACTAAACAGGTGTTGGCTATTATTAAAGAGGACACTTTACCTGCTCTTGCTGATTATCCAGTCAGAGCAGAGTCCAGAGAGCAAGCTTCCTTCGATTCGTTCTCATCCTTTTCTTCTTTGTCAAGGCAATACCAACACCATGTGTTCCTTAACTTCAGAGGCTTTGATACTCGCTACCGTTTCACTGGCACTCTCTTCAAAGCTCTCCGCGACAAGAAAATCCACACTTTCATGGATGATGTAGGCCTTCACAGAGGGAATGATATATCAAGAACACTTGTTGAGGCCATTAAAGGCTCCAGGATTGCCATCATTGTGCTTTCTGAGAACTATGCCGATTCTACTTACTGCTTAGATGAACTTGTCAAGATCTTGGAGTGCCATGAGTCTGATGGCCAGATTGTTTTTCCGGTTTTCTATGCTGTAGATCACAATGTTGTAAGATTTCAGAGAGGTAGTTACGGGGTAGCGATGGCTAGACATGAGGAAAAGTTTAAGGATCATCCATCGAAAGTCCAAAAATGGAAATGGGCTTTGCATCAAGTAGCTAATTTTACTGGCTTTGTTTTCGAAGGGAATAAATATGAACATGAGTTTATTGGGAAGATTGTTGAAGTGGTGTCAAGGGAGATTAAGCGTGTCTCTTTACTTGCTGATTATCCAATTGGACTTGAGTCTCAAGTGTCACAAGTAAAATCGCTTCTATTTTCTGATGGTTATGATGGTGTCCATATGGTGGGGATTCATGGAAATGCTGGATCAGGCAAAACAACAATAGCTCATGCAGTTTTTCATTTGATTGCTAATGGTTTTGGAAGTATGTGTTTTCTTGAAAATGTAAGAGAAAATTCATATAAGCATGGTTTAGTACATCTTCAGAATATACTTCTTGCCAACATATTCGAAAGGAAGAATCTCAAATCAACAAGCGTTGAGCATGGAATTTCAACAATAAAGCACTGGCTCCAACAAAAGAAGATCCTTCTGATTCTAGATGATGTTGACAAACTAGAACAATTACAAGCTCTTACTGGAAAAAATGATTGGTTTGGCAGTGGAACTAGAGTCATTGTTACAACACGGAACAAGAATTTACTAGTATGGCATGGAATTGAAAAAATATATGAGATGGAGAACTCATATCCAGTAAATACCCTGGAAATGGAGTCAAATATCGCTACATCAGATGGGAAAGAGAACAGAGATCAATTGAGTGAAGAAAACACTTTCGGAGAACAAGTCAATAGTTTCTGA 1389 0.3981 MAMYEHDQQFKDKAPIWRAALRDAANLSGLHFKGDEFEYEFIERVTKQVLAIIKEDTLPALADYPVRAESREQASFDSFSSFSSLSRQYQHHVFLNFRGFDTRYRFTGTLFKALRDKKIHTFMDDVGLHRGNDISRTLVEAIKGSRIAIIVLSENYADSTYCLDELVKILECHESDGQIVFPVFYAVDHNVVRFQRGSYGVAMARHEEKFKDHPSKVQKWKWALHQVANFTGFVFEGNKYEHEFIGKIVEVVSREIKRVSLLADYPIGLESQVSQVKSLLFSDGYDGVHMVGIHGNAGSGKTTIAHAVFHLIANGFGSMCFLENVRENSYKHGLVHLQNILLANIFERKNLKSTSVEHGISTIKHWLQQKKILLILDDVDKLEQLQALTGKNDWFGSGTRVIVTTRNKNLLVWHGIEKIYEMENSYPVNTLEMESNIATSDGKENRDQLSEENTFGEQVNSF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211471g00013 462 Gene3D - 258 415 IPR027417 -
Stsc211471g00013 462 Pfam TIR domain 91 254 IPR000157 GO:0007165
Stsc211471g00013 462 Pfam NB-ARC domain 270 411 IPR002182 GO:0043531
Stsc211471g00013 462 ProSiteProfiles TIR domain profile. 89 256 IPR000157 GO:0007165
Stsc211471g00013 462 SMART till_3 90 230 IPR000157 GO:0007165
Stsc211471g00013 462 MobiDBLite consensus disorder prediction 440 462 - -
Stsc211471g00013 462 Gene3D - 84 257 IPR035897 -
Stsc211471g00013 462 Gene3D - 1 59 IPR035897 -
Stsc211471g00013 462 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 91 423 IPR044974 GO:0006952
Stsc211471g00013 462 SUPERFAMILY Toll/Interleukin receptor TIR domain 83 233 IPR035897 -
Stsc211471g00013 462 FunFam Disease resistance protein (TIR-NBS-LRR class) 87 258 - -
Stsc211471g00013 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 423 IPR027417 -
Stsc211471g00013 462 PRINTS Disease resistance protein signature 290 305 - -
Stsc211471g00013 462 PRINTS Disease resistance protein signature 366 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211471g00013 Stsc-Chr211471 51589 53833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211471g00013 139 423 WRKY Transcription Factor Family AT4G12020 30.450 2.73e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211471g00013 - - aip:107641418 697.582