Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211471g00011 ATGGCTACTCTGCAAGCTTCGGGTCACTCTTCTTCAACCTTGAAGGAATGGGAGTTCGATGTGTTCATCAGCTTCAGAGGCCCTGAAACTCGCTACGGTTTCACCGGTTACCTCCACAAAGCTCTCTGTGAAAGAGGAATCCGCACCTTCATGGATCTTGAGGATCTTATTAGTGGCAATAAAATCCAGCAAACATTTGCTCGGGCAATTGAAAGCTCAAGGATTGCCATCGTTGTGTTCTCAGAGCATTATGCTGACACTTCTTTCTTGCTGAGGGAACTTGCGAAGCTATTGGAGTGCTCTCAACGTTTTGGCCAGTTTGTTCTGCCGATTTTCTATTACGTGGATCCCGGTGAAGTGCGCCATCAGAGAGGTAGTTTTGAGAAAGCAATGGCGGTGCACGAAGAGCGGTTCAAAGATAAAGCGCCAATATGGAGAGCTGCACTGCGTGATGCAGCCAACTTATCCGGCTTGCATTACAAAGGGGATGAATTTGAATATGAATTTATTGAGAAGATCACTAAACAGGTGTTAGCAATTCTTAAAGAGGACACTTTACCTGCTGTTGCTGATTATCCAGTCAGACCAGAGTCCCAAGTGCAGGCTTCCTTTGATTCATCCTCATCGTTTTCTGTCTCAAGGCAATACCAATACCATGTGTTCCTCAGCTTCAGAGGCTGTGATACTCGCTTTCGTTTCACCGGAAGTCTTTTCAAAGCTCTCCGTGACAACAAAATCCACACCTTCATGGATGATGTAGGCCTTCACAGAGGGAATGATATATCAAGAACGCTTATTGAGGCAATTAAAGGGTCCAGGATTGCCATCATTGTGTTCTCCAAGAACTATGCTGATTCTACTTACTGCTTAGATGAACTTGTCAAGATCTTGGAGTGCCATGAGTCTGATGACCAGTTTGTTTTGCCAGTTTTCTATGAGGTAGATACCAATGATGTGCGACGACAGACAGGTAGTTATGGGGAAGCAATGGCTAAACATGAGGAAAAGTTCAAGGATGACAAATCAAAAGTCCAAAAATGGAAGCATGCTTTGCATGAAGCAGCTAACTTTACTGGCTTTTGTTTCAAAGGAAAAAAATATGAACACGAGTTTATTGCGAAGATTGTTGGAGTGGTGTCAAAGGAGATCAAACGTGTTGCATTACCTGTTGCTGACTATCCAGTTGGACTAGAGTCTCAAGTGTCGAAAGTAAAATCGCTTATATTCTCTGATGGCTATGATGGTGTCCACATGGTAGGGATTCATGGAAATGGTGGATCAGGGAAAACAACAATAGCTCATGCAATTTATCATTTGATTGCTAACAGTTTTGAAAGTATATGTTTTCTTGAAAATGTGAGAGAAAACTCATATAAGCATGGTTTAGTGCATCTTCAGAATATACTTCTTTCCAACATATTTGAAAGGAAGAATCTCAAATCAACAAGCATTGAACAAGGAATTTCAACAATAAGGCACTGGCTCCAACAAAAGAAGATCCTTTTGATTCTAGATGATGTTGACAAGATAGAACAATTACAAGCTCTTGCTGGAAAACCTGATTGGTTCGGCCGTGGGACAAGAGTCATCATTACAACACGAGACAGACATTTGCTAGTATGCCATGGGATTGAAAGAATATATGAGCTTGAGAATTCAAATTCGCAGTCAAATATCATTGCATCAACAAGAAAAGACAATGGAGAACAAGTGGGTGAAAAAATCACCAGTGAACAAGTCAATGGTTCATTAGAGCCTCTAGTTTTGGAAGATACTAATCTTGATAGAAGCAAACAACTGTCGGTTATTCAAGCTGAATCAAATGCACAAGTCATAGGTCAGCTTAATGAAAGTCAAGCAGAGACTTGTCATACTCATTCTCTAGAAAGAATAGAAAATGCCAACATCACTTTGAAAGTGAAGGAGGAACTTGAAGTTAAAGACTTGTCTTTGTGTGCTGAGTTGGCATCTTTGGAGGAAAAGAAAAGAGAGCTTGAAGAGCAAATTCGTGCCTTAAAAGCTGAGATTTCAGATTTTACAGCAGAGAGACATTTGCTGAGTGGTAAAGAGTTATACAGCAGTTTGATGATGGAAAAATGCTGA 2103 0.4094 MATLQASGHSSSTLKEWEFDVFISFRGPETRYGFTGYLHKALCERGIRTFMDLEDLISGNKIQQTFARAIESSRIAIVVFSEHYADTSFLLRELAKLLECSQRFGQFVLPIFYYVDPGEVRHQRGSFEKAMAVHEERFKDKAPIWRAALRDAANLSGLHYKGDEFEYEFIEKITKQVLAILKEDTLPAVADYPVRPESQVQASFDSSSSFSVSRQYQYHVFLSFRGCDTRFRFTGSLFKALRDNKIHTFMDDVGLHRGNDISRTLIEAIKGSRIAIIVFSKNYADSTYCLDELVKILECHESDDQFVLPVFYEVDTNDVRRQTGSYGEAMAKHEEKFKDDKSKVQKWKHALHEAANFTGFCFKGKKYEHEFIAKIVGVVSKEIKRVALPVADYPVGLESQVSKVKSLIFSDGYDGVHMVGIHGNGGSGKTTIAHAIYHLIANSFESICFLENVRENSYKHGLVHLQNILLSNIFERKNLKSTSIEQGISTIRHWLQQKKILLILDDVDKIEQLQALAGKPDWFGRGTRVIITTRDRHLLVCHGIERIYELENSNSQSNIIASTRKDNGEQVGEKITSEQVNGSLEPLVLEDTNLDRSKQLSVIQAESNAQVIGQLNESQAETCHTHSLERIENANITLKVKEELEVKDLSLCAELASLEEKKRELEEQIRALKAEISDFTAERHLLSGKELYSSLMMEKC 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211471g00011 700 PRINTS Disease resistance protein signature 494 508 - -
Stsc211471g00011 700 PRINTS Disease resistance protein signature 418 433 - -
Stsc211471g00011 700 ProSiteProfiles TIR domain profile. 216 383 IPR000157 GO:0007165
Stsc211471g00011 700 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 157 IPR035897 -
Stsc211471g00011 700 SMART AAA_5 415 550 IPR003593 GO:0016887
Stsc211471g00011 700 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 218 553 IPR044974 GO:0006952
Stsc211471g00011 700 SMART till_3 18 155 IPR000157 GO:0007165
Stsc211471g00011 700 SMART till_3 217 357 IPR000157 GO:0007165
Stsc211471g00011 700 Gene3D - 388 567 IPR027417 -
Stsc211471g00011 700 FunFam Disease resistance protein (TIR-NBS-LRR class) 214 385 - -
Stsc211471g00011 700 ProSiteProfiles TIR domain profile. 17 181 IPR000157 GO:0007165
Stsc211471g00011 700 Gene3D - 13 188 IPR035897 -
Stsc211471g00011 700 Gene3D - 211 387 IPR035897 -
Stsc211471g00011 700 Pfam NB-ARC domain 398 538 IPR002182 GO:0043531
Stsc211471g00011 700 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 183 - -
Stsc211471g00011 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 554 IPR027417 -
Stsc211471g00011 700 Pfam TIR domain 217 381 IPR000157 GO:0007165
Stsc211471g00011 700 Pfam TIR domain 19 180 IPR000157 GO:0007165
Stsc211471g00011 700 Coils Coil 641 682 - -
Stsc211471g00011 700 SUPERFAMILY Toll/Interleukin receptor TIR domain 209 360 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211471g00011 Stsc-Chr211471 38015 41737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211471g00011 266 551 WRKY Transcription Factor Family AT4G12020 30.717 1.15e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211471g00011 - - aip:107641418 1105.51