Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211471g00002 ATGGCTTTGAGTTTTGAATCATACAAATGGAAGTATGATGTGTTCTTGAGCTTTAGAGGGGTTGACACACGTAGGAGTTTCACAAGCCATCTCTACCATGCTCTATGCCAAAAGGGAGTTAATAGCTTCATAGACTACAAGGAGCTTGAAAAGGGAGAGCAGATTTCGCCTTCAATTCTTAGAGCTATTGAAGGCTCTAGGATATCAGTTATCATATTCTCCGAAAACTATGCATCTTCTGTTTCTTGCTTGGATGAACTTGTTAAGATCCTTGAGTGCAAGGATTCCAAAGGGCAGCTAGTTTTGCCAGTCTTTTATAATGTGAATCCATTTCAACTAAGAGGACAGCATGGAAGTTTTGCAGAATGTTTAGCAAAACATGAAGAGAAGTTCAGGGATGATGATATCAACAAAGTGAAAAGGTGGAGAGAGGCTCTATATCAAGCTTCTACTTTGTATGGGTGGCATCTAGGAGATGGGCAGGAATCTAAGTTTGTGCAGAGAATTGTTGAAGAGATAATGAATAAGCTGAACCGCATACCTTTCAATGTTGCTAAGCATCCTGTTGGGCTGGATTCACCAACTGAAGATATCAAATCACTCTTAGATCTTGGATCAGATGGCGTGCGGACTGTAGGAATTTATGGAATCGGTGGAATAGGAAAAACAACACTCGTTAAGGCTGTTTACAATCATATTTCTCATCAGTTTGAGGGTAGTGCCTTCCTTGCAAATGTCAGCGAAATTTCAAACCAAAGGCATGGCTTAGTTCAACTTCAAGAATCACTTCTCTCAGAGGTTTTGAGCCGAAGAGATCTTAAAGTAGGCAATAAAGATAGAGGGATTAATTGGATAAAGGACAGGCTTTGCTGCAAAAAGGTTCTCATAGTTGTTGATGATTCCGATTCATTGGAGCAATTGGAATCATTGGTTGGAGACTGCAGTTGGTTTGGATCAGGAAGTAGGATTATCATAACAACTAGAGATGAGCATTTGCTAATTGCTCACAATGTGGAAACTAACTACAAGGTGAAGGAATTAAGCCATGACCATGCTCTTGAACTCTTTTCTTGGTTTGCTTTCAAAAAGCCATGTCCTGCATCAAATTATGAGGGATTGTCCTCCCAAATATTAAACTATGCCAAGGGCTTGCCATTGGCACTAACAGTTTTGGGGGCCTACCTGTGTGGTAGAGGAAAAGCTGAGTGGATAAGTGCCTCAGCTAAACTGAAAAAGATTCCAAATAAACAGATCTATGAAATACTTAAAATCAGCTTTGATGGGTTAGAAGAGGAGGAAAAGGCCATTTTTCTGGATATTGCATGTTTCTTCAAGGGAGAAGACAAAGAATATGTTAAAATGATACTTGATGCTTGTGACCTTCACTCGGATAATGGCTTTGGAGTTCTAATGGATAAGTCTCTCATCAATATGCAACTAAACAAGCTTTGGATGCATGATCTGCTACAGGAAATGGGTAAAGAAATTGTACGTCAAGAATCTCCGGGAGAACCTGGTAAACGTAGTAGGCTATGGTTTCACGAAGATATACTTCATGTATTAAACCAAAACATGGGAACTAACAACATTGAAGGCATAAAGCTTGACCTACCAGAACCAGATACCATAAATGGCAAAGCCTTGTCAAACATGAAAAGACTTAGAGTTCTTATGATCAGCAATGCACGTGTTACCGATGAAATTCAGTATCTCTCTGATGAGCTAAGACTAATTGATTGGCCCGGATACCCCTCTTCAACTCTACCACCAAATTTCCATCCGAGAAGACTAGTTTCCTTAAACATGAGTCATAGCCACATCAAATATTTGTGGAAGGGAGCAAAGATATTCAGAGACTTGAAACTTGTGTCTTTTAGCTGCTGTGAATACCTCACTGAAATTCCAGACATGTCAATGGTCCCAAACCTTGAGAGTCTCAGCATAGACAATTGTAAAAGTCTAATAAGGGTAAATGAGTCTGTAGGATCTCTTGATAAGCTTGTTACTTTAAACCTTATGTTCTGCTCCAACCTCAATACTCTTCCAAATCGCTTCAAGTTAAAGTCTCTTCGTAATCTTCTCCTTACCGGCTGCTCAAAGCTAAGAAAGTTTCCTGAGATTGTTGAGAATATGGAACATCTTGAAGAAATCCTTCTCCAAGGGACAGCTATAAAAGAACTACCTCACTCAATCGAATACCTAGTCGGGATAAAATCCTTGTTCCTAGATTCTTGCCAGAATCTTGAGCATCTCCCCAGTAGCCTTCAGAAATTGCAATACCTTACTACTCTTAATCTTAGTTACTGCTCTAAGCTTCGGGAGCTTCCAAAACTTCCACCAAATACAAAATTTTTAGACATAAGTGATTGTAGATCTTTGGAAAGTTTTACAATGTTGTCCAGCCCATCAAATGTTATTGCTGAGGATCTCTCAAGTTTTCAACAAATGAGGTTCATTAACTGCCATAAACTGATTAATGAACAGGTCCAAGTTCACTTAACAAATCTCTTCTACAATGAGGGACCTGATAGTGACACTTATCTGGTATTTGTTAATGGTGACCTTGTGCTTCCCGCCAGCAAGATCCCGGATTGGTTTCATCATCAAAGTACTAATGGTTCAATTACTCTTGAGATGGCTTCAATTTTGTATGGTAAGCCTGCAAAGTTGTTTCTTGGTGCAGTTATTGAGTTGGAGAAAGGAGCTTCCACAACCAGCATGTTTGCATGTACATATGAAATTTTCATAAACGATCAGAAAGTATTTGGGCAACAAAGAACTTTCGAAGCACTGGACTCGAGTCATGTGTGGTTGAGTAGGATCAAATGCAGTCATTTGATGTGGCACCTCAACAATGTTCGTTACTGGAATCACTTGCGGGTTTCATTTTGGATATCTGAAGTATCATCAAAGGTGAAAGTCAGAGCAGTCTTGAAGAATTGTGGCTTCCATATATGCTGCAATCAAGAAGGGTATATGGTTGATCCTACAGCAATAAGGAATTCCATAGGATAA 3015 0.3947 MALSFESYKWKYDVFLSFRGVDTRRSFTSHLYHALCQKGVNSFIDYKELEKGEQISPSILRAIEGSRISVIIFSENYASSVSCLDELVKILECKDSKGQLVLPVFYNVNPFQLRGQHGSFAECLAKHEEKFRDDDINKVKRWREALYQASTLYGWHLGDGQESKFVQRIVEEIMNKLNRIPFNVAKHPVGLDSPTEDIKSLLDLGSDGVRTVGIYGIGGIGKTTLVKAVYNHISHQFEGSAFLANVSEISNQRHGLVQLQESLLSEVLSRRDLKVGNKDRGINWIKDRLCCKKVLIVVDDSDSLEQLESLVGDCSWFGSGSRIIITTRDEHLLIAHNVETNYKVKELSHDHALELFSWFAFKKPCPASNYEGLSSQILNYAKGLPLALTVLGAYLCGRGKAEWISASAKLKKIPNKQIYEILKISFDGLEEEEKAIFLDIACFFKGEDKEYVKMILDACDLHSDNGFGVLMDKSLINMQLNKLWMHDLLQEMGKEIVRQESPGEPGKRSRLWFHEDILHVLNQNMGTNNIEGIKLDLPEPDTINGKALSNMKRLRVLMISNARVTDEIQYLSDELRLIDWPGYPSSTLPPNFHPRRLVSLNMSHSHIKYLWKGAKIFRDLKLVSFSCCEYLTEIPDMSMVPNLESLSIDNCKSLIRVNESVGSLDKLVTLNLMFCSNLNTLPNRFKLKSLRNLLLTGCSKLRKFPEIVENMEHLEEILLQGTAIKELPHSIEYLVGIKSLFLDSCQNLEHLPSSLQKLQYLTTLNLSYCSKLRELPKLPPNTKFLDISDCRSLESFTMLSSPSNVIAEDLSSFQQMRFINCHKLINEQVQVHLTNLFYNEGPDSDTYLVFVNGDLVLPASKIPDWFHHQSTNGSITLEMASILYGKPAKLFLGAVIELEKGASTTSMFACTYEIFINDQKVFGQQRTFEALDSSHVWLSRIKCSHLMWHLNNVRYWNHLRVSFWISEVSSKVKVRAVLKNCGFHICCNQEGYMVDPTAIRNSIG 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211471g00002 1004 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Stsc211471g00002 1004 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 155 IPR035897 -
Stsc211471g00002 1004 SUPERFAMILY "Winged helix" DNA-binding domain 417 521 IPR036390 -
Stsc211471g00002 1004 SMART till_3 11 152 IPR000157 GO:0007165
Stsc211471g00002 1004 SUPERFAMILY L domain-like 498 819 - -
Stsc211471g00002 1004 Pfam C-JID domain 857 987 IPR045344 -
Stsc211471g00002 1004 Gene3D - 179 343 IPR027417 -
Stsc211471g00002 1004 Pfam TIR domain 11 181 IPR000157 GO:0007165
Stsc211471g00002 1004 Pfam NB-ARC domain 198 420 IPR002182 GO:0043531
Stsc211471g00002 1004 Gene3D - 8 178 IPR035897 -
Stsc211471g00002 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
Stsc211471g00002 1004 Gene3D - 346 430 IPR042197 -
Stsc211471g00002 1004 Gene3D Ribonuclease Inhibitor 685 837 IPR032675 -
Stsc211471g00002 1004 Gene3D Ribonuclease Inhibitor 521 684 IPR032675 -
Stsc211471g00002 1004 PRINTS Disease resistance protein signature 211 226 - -
Stsc211471g00002 1004 PRINTS Disease resistance protein signature 381 395 - -
Stsc211471g00002 1004 PRINTS Disease resistance protein signature 756 772 - -
Stsc211471g00002 1004 PRINTS Disease resistance protein signature 288 302 - -
Stsc211471g00002 1004 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 795 IPR044974 GO:0006952
Stsc211471g00002 1004 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211471g00002 Stsc-Chr211471 2364 6017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211471g00002 5 788 WRKY Transcription Factor Family AT4G12020 33.948 5.76e-116 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211471g00002 - - ahf:112749316 1850.1