Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211470g00014 ATGGCTAGATCCAAGGTGAAGCTTGCATACATAACCAATGATTCTTCAAGGAGGATTACGTATAAGAAGAGGAAAAAAGGGTTGATGAAGAAAATCAATGAATTAAGCACCCTCTGTGGGGTTGATGCCTGTGCCATTGTGTACAATTCACGTCAAGACTCTCATCCTCTTGATGAGCCCGAGGTTTGGCCCTCTCGCGAGGGAGTTGAAAAGGTGGTGGAAAAATTCCGTAAAATGTCTACATTAGATCAAAACAAGAAGAGGATGGATCACGTGGATTACTTGAACCTAAGGATCTCAAAAGAGAAGGAGAGACTCAAGAAGAAGAGGAATGAAAATAGCGAGAAAGAGTTCACCCTTCGCATGCATGATTTCATGCGGACAAAACAGCTCCCCGAGAATTTGACCATGTTTGATCTGAATACCATGGCTTATTATACTGATATGAAGCTTAGGGAGGTTGAGATGAGGATGCAGAAACTACTGGACAAAGAGAACAAGGAGAAGATGAAGGATATCGCATCGTCATCGTCGGCCGCTCCTCCCCCGGAGAGTTCTGAAGAGGCTAGTAGGAAGATGATGATGAATCCTTTTTCATTTTTTGATGAAGGCAACAATAGCAGTGATGGCTTGGAGATGATTATTGCAAATGCAATGAGGCTTAATAAGTAA 672 0.4256 MARSKVKLAYITNDSSRRITYKKRKKGLMKKINELSTLCGVDACAIVYNSRQDSHPLDEPEVWPSREGVEKVVEKFRKMSTLDQNKKRMDHVDYLNLRISKEKERLKKKRNENSEKEFTLRMHDFMRTKQLPENLTMFDLNTMAYYTDMKLREVEMRMQKLLDKENKEKMKDIASSSSAAPPPESSEEASRKMMMNPFSFFDEGNNSSDGLEMIIANAMRLNK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211470g00014 223 Coils Coil 151 171 - -
Stsc211470g00014 223 MobiDBLite consensus disorder prediction 167 190 - -
Stsc211470g00014 223 FunFam Agamous-like MADS-box protein AGL80 13 103 - -
Stsc211470g00014 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc211470g00014 223 PANTHER MADS BOX PROTEIN 3 136 - -
Stsc211470g00014 223 Coils Coil 92 112 - -
Stsc211470g00014 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc211470g00014 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc211470g00014 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc211470g00014 223 SUPERFAMILY SRF-like 3 99 IPR036879 GO:0003677|GO:0046983
Stsc211470g00014 223 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc211470g00014 223 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Stsc211470g00014 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc211470g00014 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211470g00014 Stsc-Chr211470 102666 103618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211470g00014 3 183 Type I MADS-box Gene Family AT1G65330 44.022 3.44e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc211470g00014 SRF-TF 6.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211470g00014 - - aip:107606857 296.975