Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211469g00045 ATGGACTTGCTTCAAAACTTGAACCTTTCAAGAAACAATTTAGATGGCCAAATCCCTGAAGTCTTGGCACAACTTGAGCATCTCAATTCCCTGGATCTTTCCCAGAATAACTTGAAGGGAACAATTCCTCAGGGCTTTGCCAATCTCTCCAACCTGATGCATCTCAACCTTTCTTTCAATCAACTTGAAGGCCCTGTGCCTGTGACTGGAATATTTGCACATATCAATGCATCTGATATTAAGGGAAATCAAGATCTTTGCGGAGCAAAATTCTTAAGGCCATGCAGAGAAGGTAATAATCATACTCTATCTAAAAGGAGCATAGCTATTATTGCTGCACTTGGATCTCTTGCAATACTCCTACTTCTAGTGCTTGTGATTTTGATTCTCAACCGAGGCAACAAACTTCGCAATTCTAAGCCAAAAAAGAGTAGTGAGAATCAAGAACCAGATTACACGTCAGCATTGGCTCTTAAAAGATTCATTCCAAGTGAGTTAGAGAATGCCACTGGCTTATTCAGAGCAGACAACATCATTGGCAGTAGCGGTTTGAGCACAGTTTACAAGGGCCAACTTGAACAAGGCCAGATTGTAGCCATCAAAAGATTGAATTTGCATCAATTCTCTGCAAACACTGATAAGATCTTCAAAACAGAAGCCAGCACCTTGAGCCAGCTGAGGCATAGAAATTTGGTGAAGGTTCTTGGTTATGCATGGGAGAGTGGGAAATTGAAAGCTCTAGTTCTAGAGTACATGGAAAATGGGAATTTGGATACCATCATACACGACGAATCAGTTGATCAGTCTAGGTGGACATTATCCGAAAGGATCCGTGTTCTAATTTCCATTGCTAGCGGATTGGACTACTTACACTCTGGTTATGACTTTCCCATTGTGCACTGTGACTTAAAACCTTCTAACATCCTTTTAGATAGAGACTGGGAAGCTCATGTCAGTGATTTTGGGACGGCTCGAATTCTAGGTGTCCATCTGCAGGATGGTAACACCCTTTCCTCATCTGCAGCTTTGCAAGGCACAGTTGGCTATCTGGCACCAGAAATTGCTTACATAAGGAAAGTTACACCTAAAGTGGACGTGTTCAGCTTTGGCATAATTGTAATGGAGTTTCTAACAAAANNNNNNNNNNTGGATGGCCTGCCAGTAAGTCTGCCTGAGGCAGTAGAGAAAGCCATTGTAAATGGAATGAACGAGGTCATGAATATCGTGGACCCTATGCTGGCCATGGCCATGGATGACACAAAAGGCCATGTTGATGTTTTGGTAGGACTCTTCAAGTTATCCTTGTGTTGTACCCTCCCCAATCCTGAAGATCGACCTGACATTAATGGGGTGTTATCTACTCTTATGAAGCTTCAAACAGCAAGATAA 1389 0.4197 MDLLQNLNLSRNNLDGQIPEVLAQLEHLNSLDLSQNNLKGTIPQGFANLSNLMHLNLSFNQLEGPVPVTGIFAHINASDIKGNQDLCGAKFLRPCREGNNHTLSKRSIAIIAALGSLAILLLLVLVILILNRGNKLRNSKPKKSSENQEPDYTSALALKRFIPSELENATGLFRADNIIGSSGLSTVYKGQLEQGQIVAIKRLNLHQFSANTDKIFKTEASTLSQLRHRNLVKVLGYAWESGKLKALVLEYMENGNLDTIIHDESVDQSRWTLSERIRVLISIASGLDYLHSGYDFPIVHCDLKPSNILLDRDWEAHVSDFGTARILGVHLQDGNTLSSSAALQGTVGYLAPEIAYIRKVTPKVDVFSFGIIVMEFLTKXXXXDGLPVSLPEAVEKAIVNGMNEVMNIVDPMLAMAMDDTKGHVDVLVGLFKLSLCCTLPNPEDRPDINGVLSTLMKLQTAR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211469g00045 462 PANTHER LEUCINE RICH REPEAT KINASE 2 3 459 - -
Stsc211469g00045 462 Pfam Protein kinase domain 175 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211469g00045 462 Pfam Leucine rich repeat 4 62 IPR001611 GO:0005515
Stsc211469g00045 462 FunFam Leucine-rich repeat receptor-like protein kinase 3 97 - -
Stsc211469g00045 462 PRINTS Leucine-rich repeat signature 28 41 - -
Stsc211469g00045 462 PRINTS Leucine-rich repeat signature 49 62 - -
Stsc211469g00045 462 SUPERFAMILY L domain-like 4 87 - -
Stsc211469g00045 462 SUPERFAMILY Protein kinase-like (PK-like) 148 456 IPR011009 -
Stsc211469g00045 462 Gene3D Transferase(Phosphotransferase) domain 1 252 462 - -
Stsc211469g00045 462 Gene3D Phosphorylase Kinase; domain 1 134 251 - -
Stsc211469g00045 462 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 133 251 - -
Stsc211469g00045 462 Gene3D Ribonuclease Inhibitor 1 103 IPR032675 -
Stsc211469g00045 462 SMART serkin_6 173 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211469g00045 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Stsc211469g00045 462 ProSiteProfiles Protein kinase domain profile. 173 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211469g00045 462 FunFam Os07g0541700 protein 252 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211469g00045 Stsc-Chr211469 240686 242271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211469g00045 1 83 Receptor kinase-like Gene Family AT5G46330 36.905 4.14e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc211469g00045 Pkinase 4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211469g00045 K13420 - gmx:100817960 649.047