Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211469g00025 ATGGCGGGAAAGGCTAAACGGAAAACCTCTGCTTCTGCGTCACCCTCTTCCTCTGTTCCCTCTCGCGAACTAGTGTTCAGCATTAAAACAAGCAAGGGGATGAAGAGATCGCTGCGGCAGACGAATTCGAGAAAGAGACCTAAAGCAAAGCAAAAGATTGATGCCAAGAAGCCAAAGAAACCTCCCACTGCGTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAACCCAGATGTCAAGTCAATGCGAGATATTGGCAAGGCATGCGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATGTAGCAACACAAAAACGCGCAGAATTTGATATGGCAATGGCAGAATATAATAAGAAAATGGAAAACGGTGAATTTGAAGAAACTGATGAAGAATCGGATTTTGATGAATAA 441 0.424 MAGKAKRKTSASASPSSSVPSRELVFSIKTSKGMKRSLRQTNSRKRPKAKQKIDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDVATQKRAEFDMAMAEYNKKMENGEFEETDEESDFDE 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211469g00025 146 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 35 143 IPR031061 -
Stsc211469g00025 146 SUPERFAMILY HMG-box 43 129 IPR036910 -
Stsc211469g00025 146 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 58 127 IPR009071 -
Stsc211469g00025 146 MobiDBLite consensus disorder prediction 9 25 - -
Stsc211469g00025 146 Gene3D High mobility group box domain 41 142 IPR036910 -
Stsc211469g00025 146 MobiDBLite consensus disorder prediction 38 55 - -
Stsc211469g00025 146 Pfam HMG (high mobility group) box 58 127 IPR009071 -
Stsc211469g00025 146 MobiDBLite consensus disorder prediction 1 60 - -
Stsc211469g00025 146 SMART hmgende2 57 128 IPR009071 -
Stsc211469g00025 146 CDD HMG-box_AtHMGB1-like 59 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211469g00025 Stsc-Chr211469 159702 162132 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc211469g00025 HMG_box 5.3e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211469g00025 - - gmx:100809401 179.104