Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211469g00023 ATGGAGGTTGGTGGTAAGAAGATCATGAGGAAAAACAAAGGGAAACAAAAGAGAGAAATGAAAAAGATTCAGGACAAGAAGAGTTGTCAAATTGCTTTCGCCAAAAGAAAAGATGGCGTTATGAAGAAAGCAAATGAGGTGAGAGCTCTGTGCGCTGCAAGTGTTGACTTGATAATGTTTTCTCCAACCAGAAAGGCATATTTCTATGGAGATCCTTCAATGAAGACGATCAAATTGGCTCTCTCAGAGGAAGGCGAAGATGAATTCCTCAGTTACATCATGGAGGGAACGTCCGAGGTGGAGATGAAAGATCTGATTGCGAAGAACGATTCACTTGTGGATCAATTGAATTTTGAGAAAGAACGAGGTGAAACCCTTGCTAGGGTTTTGAAAACAGTTAGTAACATCACCAACAATGAAGAGACAGAGGAAGAACTTTTGGTTCTTCAAAAGCTCTTGAAGGATCGTGTTTCAATCAATGCAACTGCGGCTTCTAATTCTCATCATCATGGCGATCAAACCATGGTTCAAGTCAATACTACTGAAATTATTGGATCATACCCTACTCATGTCAACCCTTTTGACACTACTACTACAAGAGGAATTGGTGACCATAATGCCCCTGTCTGGTATCCTTCAGATCAACACCAACAAGGATATAATGGTCCATTTTTCTACAATGCTGGTAACGGAAATGGTGTGGGAGGAGGAGGAAGCGGCGACGGTGCCAGTGGCAGTGGAAGTGGAAGTCATGTTTACAATTCAAATTATTATAACAATAATAATAACGAGGGAGGCATTTTTGGTTTTCCAAACGAGAACAATAATAATCCATTTAACAATGGTGGTTATGGCGGCAGAGGGTTCTTCTAA 873 0.4078 MEVGGKKIMRKNKGKQKREMKKIQDKKSCQIAFAKRKDGVMKKANEVRALCAASVDLIMFSPTRKAYFYGDPSMKTIKLALSEEGEDEFLSYIMEGTSEVEMKDLIAKNDSLVDQLNFEKERGETLARVLKTVSNITNNEETEEELLVLQKLLKDRVSINATAASNSHHHGDQTMVQVNTTEIIGSYPTHVNPFDTTTTRGIGDHNAPVWYPSDQHQQGYNGPFFYNAGNGNGVGGGGSGDGASGSGSGSHVYNSNYYNNNNNEGGIFGFPNENNNNPFNNGGYGGRGFF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211469g00023 290 PANTHER MADS BOX PROTEIN 15 151 - -
Stsc211469g00023 290 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Stsc211469g00023 290 Gene3D - 25 99 IPR036879 GO:0003677|GO:0046983
Stsc211469g00023 290 SUPERFAMILY SRF-like 14 78 IPR036879 GO:0003677|GO:0046983
Stsc211469g00023 290 Coils Coil 102 122 - -
Stsc211469g00023 290 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Stsc211469g00023 290 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Stsc211469g00023 290 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Stsc211469g00023 290 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Stsc211469g00023 290 Coils Coil 6 26 - -
Stsc211469g00023 290 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211469g00023 Stsc-Chr211469 145907 147354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211469g00023 10 126 Type I MADS-box Gene Family AT3G04100 35.246 6.46e-16 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc211469g00023 SRF-TF 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211469g00023 - K04454 ahf:112762769 222.631