Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211469g00021 ATGGCCGATGAACCAATGCCCACTCGCTGGTCCTTCCAGGACTTCAAATTGAATTATGATGCAATGTTTGGGAGGAAGAAAGTGGTGGTGAATGGCGAGGCTGCTGATAAAGCTGTCGCTAATGGAAACTCGTTGAACCACGCATCCAACGGCAACCTGCATGTGAAAAGACCAGCTGAGATGACCATCTATGAGCAGTTTCAGAGCCAGGGGCAGAATTCTGCGCAGACAAATGGATTTTCACCAAACCATGGGAGCGAAATGCCGCAAAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAGATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATAATTCGTGGGAATCCAAATGTGAAGTGGGAAAGCATCAAGGGGCTTGGGAATGCCAAAATTTTGCTAAAAGAGGCTGTTGTAATGCCCATTAAGTATCCCAAGTACTTTACTGGTCTCTTATCTCCATGGAAAGGCATTCTCCTCTTTGGCCCACCAGGGACAGGAAAGACAATGCTTGCAAAGGCTGTCGCAACTGAGTGCCAGACTACATTTTTTAATATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGCATTCAACGTGGTGAAGCACGTAGTGAACATGAAGCAAGTAGACGACTAAAAACTGAACTGCTCATCCAGATGGACGGTTTGTCTAAGACTGATGATCTTGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGTCTTGAAAAGCGAATCCTCGTACCACTCCCAGAACCAGAAGCAAGAAGATCCATGTTCGAGGAACTCCTTCCTCCACAGCCTGATGGGGAAGAAATCCCCTATGATTTGCTAGTGGAGCGGACTGAAGGATATTCTGGGTCAGATATCCGGTTACTCTGCAAAGAGACAGCAATGCAGCCTTTGAGACGCCTAATGTCTCAACTTGAACAGAAACAAGAGGTGGTGCCGGAAGAAGAGTTGCCAAAAGTTGGGCCAATCAGATCTGAAGATATAGAAACAGCATTGAAAAATACAAGGCCATCTGCTCATCTGCATGCCCACAAATATGAAAAGTTTAATGCTGACTATGGCAGTCAAATACTTCATTGA 1122 0.4581 MADEPMPTRWSFQDFKLNYDAMFGRKKVVVNGEAADKAVANGNSLNHASNGNLHVKRPAEMTIYEQFQSQGQNSAQTNGFSPNHGSEMPQKSLLPPFESAEMRTLAESLSRDIIRGNPNVKWESIKGLGNAKILLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECQTTFFNISASSVVSKWRGIQRGEARSEHEASRRLKTELLIQMDGLSKTDDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRSMFEELLPPQPDGEEIPYDLLVERTEGYSGSDIRLLCKETAMQPLRRLMSQLEQKQEVVPEEELPKVGPIRSEDIETALKNTRPSAHLHAHKYEKFNADYGSQILH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211469g00021 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 352 IPR027417 -
Stsc211469g00021 373 FunFam Katanin p60 ATPase-containing subunit A-like 2 261 349 - -
Stsc211469g00021 373 PANTHER AAA DOMAIN-CONTAINING 200 369 - -
Stsc211469g00021 373 SMART AAA_5 155 262 IPR003593 GO:0016887
Stsc211469g00021 373 Gene3D - 261 349 - -
Stsc211469g00021 373 Gene3D - 206 364 IPR027417 -
Stsc211469g00021 373 Gene3D - 118 198 IPR027417 -
Stsc211469g00021 373 Pfam AAA+ lid domain 286 322 IPR041569 -
Stsc211469g00021 373 Pfam ATPase family associated with various cellular activities (AAA) 204 259 IPR003959 GO:0005524|GO:0016887
Stsc211469g00021 373 Pfam ATPase family associated with various cellular activities (AAA) 159 200 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211469g00021 Stsc-Chr211469 120376 125425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211469g00021 153 332 Calmodulin-binding Proteins AT3G56690 32.227 1.64e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211469g00021 K07767 - gmx:100794098 610.142