Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211469g00016 ATGAAGGAAAGCAATTCATCAGCACCCGCAATGATTAACAGCAAATGGCTTTTAAAGCGTAAGCGCAGAAAGCTCCCTTCAGGGCAGGATCAATCCTCTGGTAAAGAGGAATCCAATGGTAAAGAGCAATCCAATTGTAAAGAGCAATCCAATGGGAAAGAGCAATCAAATGGTAAAGATGACAATTCAGCAACATCTGACTCTTCTAGGAGTGCTTCGGCTAAACGCATGTTAAAGACTGAAGCAGCTACTGATCAATCTTCGTCCAAGAAGAAAGGACATGATGGGTATTACTATGAATGTGTGGTCTGTGATCTTGGTGGCAACTTATTGTGCTGTGATAGCTGTCCTCGCACTTATCATTTGCAGTGTCTTAGTCCACCTCTTAAGCGCATCCCCACGGGGAAGTGGCAATGTCCAAGCTGCTTTGAAGAAAATGATCACGTAAAGCCTATGGATCATTTGGAGTCAATTTCGAAACGAGCAAGGACCAAGATAGCTAAGGACAAGCAAGTTGGAGCTAACTCACTTTGCCTTGAGAAAGTTTCTCGAATTTTTGGAAATAAACACATTTCCAAGAAAAGGTCATCGAGCAAAGCAAAGCCTATTTCCAGTTTGGGGGTGAAATTCTTTGATAAGAAACCATTTTCTTCACTAGAGGATGCAAACAAGCCAAAAGACCCATCCGTTGGGAGTTCCATAGAAGGAACTTCATCATGTGCTGATGTTGATGACAAAAAATCAAGTGCTTCCCCAACAGTTGTCCTTGTGGATGAGAGGGCATCTTCACCTGCTAGGGAAATCGTTTCTCCTTCTAAAGATACTAATTTAGAGTCAAATGATGAACAGCTGGAGGGAAAGCCTGATTTATCTTGTAATCAAATCCCTATAAAAAAGACACTTGTTCTTGCAATTGGTGTTGGTAGAGAGGAGGGGAGAAAAAGAAAGAATAAAGATGTTAATAATAATACTAGCCAAAAGAAGCGTAGGACTGAAAAGGGGAAAACTTTTGTCAATACCTCTGTAAAGTGTAAGTCTGGCAATAATAAAGCGCCGAAGAAGAAATCTGTAAGTTATAGCATGTCTGCATCTGGATCAAAAGAGAAATTTGGAAACAAAGATTCTGAAGTCCCGAAGAAAGATAAGATGATCTCTCGGCTAATAAAAGACACATCAAATGAGCCTGATATAGCAGGAAGGCATGCGGATGGAACTTTGATGGGTGAAGATAGTGCTGTTGTTGAATCTTTGCAGGTTGATCGGGTTCTAGGGTGCCGAATTCAAGGTGAGAATGCAAACACATTACAACCTGCATCTTTGACCGTTTCAAATGACTCACCTGGTGATCAGGCAATCTCAGAAAACCAGAACCGACTATTGGAGGATAATTCCACTGATGATAATGATTTGGATGCTGAAACAGCTGAAAATGTTGTTGATGATCCACAAAATGTTATCAAGAGTTCTGATAAAGAAGAACCATTGACAAACTCCAATAGAGGGGAAACAATTAATGTATACAGAAGATCAACGACAAAGGAAAGTAAGAAGGGAAGTTCTGCAGATTCATTGAGTAAACCTACTGATGATTTAGGTTCCTGTCCCAGGGATAGTAATGATCAGGATGATTCTACCGTTTCTGCTGAAAATTTGGAAAAAGCAAGTGACAAGATGGAAGTGGAGGAGAGTATCACTCTTGCTTTAGAAAGCAAGGATAACAGTGGGCTTCCAGAAAACTCTGAAATGCTGGCCCCCCTTGAGACAAAACTGAAAGAAGTGGATATGGAGAAGGGAGTGAGTACCGATGTAATTGAGAAAAAAGTTCTGGATGCTAACGTGGCTGAATCTTCTTCTCCAAATGGAAAGAAAGTCTCCTATGAATTTTTAGTTAAGTGGGTAGGAAAATCTAATATTCATAATAGTTGGATTTCTGAATCCCGGTTGAAAGTCCTTGCCAAGAGAAAACTAGAAAATTACAAGGCGAAGTATGGGGTATCAATAATAAATATTTGTGAGGAGCGTTGGAGACAGCCTCAGCGAGTCCTTGCACTTCGTACTTCAAAAGATGGAACATCTGAAGCATTTGTAAAGTGGACTGGACTACCATATGATGAATGCACTTGGGAAAGTTTAGATGAACCTGTGCTTCAAAAGTCTTCTCATCTAGTTACACTTTTTCATAAGCATGAAGCCCTAACTCTCGAAAGGGATGCATCAAAGGAAAATTCAGCAAGGAAAAGCAATGAACATCGGCATGATATCTTTAATCTAACGGAGCAACCTACGGAGCTGAAAGGCGGCGCATTATGA 2310 0.4052 MKESNSSAPAMINSKWLLKRKRRKLPSGQDQSSGKEESNGKEQSNCKEQSNGKEQSNGKDDNSATSDSSRSASAKRMLKTEAATDQSSSKKKGHDGYYYECVVCDLGGNLLCCDSCPRTYHLQCLSPPLKRIPTGKWQCPSCFEENDHVKPMDHLESISKRARTKIAKDKQVGANSLCLEKVSRIFGNKHISKKRSSSKAKPISSLGVKFFDKKPFSSLEDANKPKDPSVGSSIEGTSSCADVDDKKSSASPTVVLVDERASSPAREIVSPSKDTNLESNDEQLEGKPDLSCNQIPIKKTLVLAIGVGREEGRKRKNKDVNNNTSQKKRRTEKGKTFVNTSVKCKSGNNKAPKKKSVSYSMSASGSKEKFGNKDSEVPKKDKMISRLIKDTSNEPDIAGRHADGTLMGEDSAVVESLQVDRVLGCRIQGENANTLQPASLTVSNDSPGDQAISENQNRLLEDNSTDDNDLDAETAENVVDDPQNVIKSSDKEEPLTNSNRGETINVYRRSTTKESKKGSSADSLSKPTDDLGSCPRDSNDQDDSTVSAENLEKASDKMEVEESITLALESKDNSGLPENSEMLAPLETKLKEVDMEKGVSTDVIEKKVLDANVAESSSPNGKKVSYEFLVKWVGKSNIHNSWISESRLKVLAKRKLENYKAKYGVSIINICEERWRQPQRVLALRTSKDGTSEAFVKWTGLPYDECTWESLDEPVLQKSSHLVTLFHKHEALTLERDASKENSARKSNEHRHDIFNLTEQPTELKGGAL 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211469g00016 769 ProSiteProfiles Zinc finger PHD-type profile. 98 145 IPR019787 -
Stsc211469g00016 769 SUPERFAMILY FYVE/PHD zinc finger 91 143 IPR011011 -
Stsc211469g00016 769 ProSitePatterns Zinc finger PHD-type signature. 101 142 IPR019786 -
Stsc211469g00016 769 CDD CD1_tandem 602 660 - -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 737 758 - -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 1 93 - -
Stsc211469g00016 769 CDD CD2_tandem 675 728 - -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 217 290 - -
Stsc211469g00016 769 SMART chromo_7 416 664 IPR000953 -
Stsc211469g00016 769 SMART chromo_7 674 731 IPR000953 -
Stsc211469g00016 769 Pfam PHD-finger 101 143 IPR019787 -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 313 381 - -
Stsc211469g00016 769 SUPERFAMILY Chromo domain-like 622 663 IPR016197 -
Stsc211469g00016 769 ProSiteProfiles Chromo and chromo shadow domain profile. 676 738 IPR000953 -
Stsc211469g00016 769 SMART PHD_3 100 143 IPR001965 -
Stsc211469g00016 769 ProSiteProfiles Chromo and chromo shadow domain profile. 603 662 IPR000953 -
Stsc211469g00016 769 CDD PHD2_CHD_II 101 142 - -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 313 336 - -
Stsc211469g00016 769 SUPERFAMILY Chromo domain-like 669 717 IPR016197 -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 44 84 - -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 230 246 - -
Stsc211469g00016 769 PANTHER PHD FINGER PROTEIN 13 350 - -
Stsc211469g00016 769 Pfam Chromo (CHRromatin Organisation MOdifier) domain 677 729 IPR023780 -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 23 43 - -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 533 561 - -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 737 769 - -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 337 368 - -
Stsc211469g00016 769 Gene3D - 591 664 - -
Stsc211469g00016 769 MobiDBLite consensus disorder prediction 457 561 - -
Stsc211469g00016 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 157 IPR013083 -
Stsc211469g00016 769 Gene3D - 678 728 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211469g00016 Stsc-Chr211469 82524 87134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211469g00016 101 142 PHD Transcription Factor Family AT2G36720 57.143 1.48e-10 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc211469g00016 Chromo 1.2e-11 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211469g00016 - - gmx:100793933 952.97