Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211469g00015 ATGTACAACTTGCTCAATTTCTTGCAACCATCATCATTTCCTTCTCTGTCTTCATTTGAGGAGAAGTTTAATGATCTTACGACTGCGGAAAAGGTTGACGAGTTGAAAAAACTTGTGGCTCCTCACATGCTTCGTAGACTTAAAAAGGATGCAATGCAGAATATTCCTCCCAAGACAGAAAGAATGGTTCCTGTTGAGTTGTCATCCATCCAAGCTGAATATTACCGTGCAATGCTTACAAAGAATTATCAAATTCTGCGGAATATTGGGAAAGGGGTTGCTCAACAATCTATGCTGAACATTGTTATGCAACTGAGGAAGGTCTGCAATCATCCATATCTCATACCAGGAACTGAGCCTGATTCTGGGTCTGTTGAATTTCTTCATGAAATGAGAATAAAGGCTTCAGCTAAGCTTACTCTCCTGCACTCCATGCTAAAGATTTTACATAAGGAAGGACACAGAGTTCTTATTTTCTCACAAATGACCAAACTGCTCGACATCCTTGAGGACTATTTGACCATAGAATTTGGGCCTAAAACATATGAGAGGGTGGATGGCTCTGTTGCTGTTGCTGATCGTCAGACAGCAATTGCACGCTTTAACCAAGACAAGAGTCGATTTGTTTTCTTGTTATCTACTCGTTCTTGTGGACTTGGGATTAATTTGGCGACTGCTGACACTGTCATCATCTATGACTCTGATTTTAACCCTCATGCAGATATCCAAGCCATGAATCGAGCACACAGAATTGGTCAATCAAAGAGACTTTTGGTATACCGCCTTGTGGTTCGTGCTAGTGTTGAAGAGCGTATCTTACAGCTTGCCAAGAAGAAACTGATGCTTGATCAGCTTTTTGTAAATAAGTCTGGATCTCAAAAAGAAATTGAAGATATTTTGAAATGGGGAACTGAAGAACTCTTCAATGATTCTCCTGGTCTAAATGCAACTGAAACTAACAATAGTAACAAAGATGAGACAATAATAGATGTAGCTCACAAGCAACGGAGGAGGACTGGTGGTCTGGGAGATGTTTACAAAGACAAGTGCACAGATAGCAGCAGCAAGATTGTGTGGGATGAAAATGCAATTTCTAAATTGCTTGATCGTTCAGACCTTCAAGATGGTTCAACAGATATTGCTGAAGGGGATTCCGAGAATGATATGCTTGGCTCAGTGAAGGCACTTGAGTGGAATGATGAGCCAGCTGAGGAGCATGGAGTGGATGAATCTCCTCCCCACGGAACTGATGATTTATGTACTCAAAATTCTGAAAAGAAAGATGATGCTGCCATGATTGCCAATGAAGAAAATGAATGGGACAGACTACTGCGTGTGAGGTGGGAGAAATATCAAAGTGAGGAGGAAGCAGCCCTTGGTCGAGGGAAGCGCCAGAGAAAAGCTGTTTCTTATAGGGAAGCATATGCTCCACACCCAACTGAAACAAATAGTGAGAGTGGCGGTGAGGAGGAAAAAGAGCCAGAACCAGAACCAGAGCGTGAGTATACACCAGCAGGACGGGCACTGAAGACAAAATATGCTAAACTCCGTGCTCGGCAGAAGGAACGAATTGCTCGGAAGAAAGCAGCAGCATCACGTCCTCCTGAGGAAATTCCAGGAGTTGAGTCACTCCCCCAGCTTCCAGCTAAGGGTGGGGACCTTGGAGCTGGAGCGATGCATCCTGTTCAAGAGGGGCCTTCCATCAACTTACCGGACAGCAAATCTAATCAACTTGCTGAAGCACAAGTTCAGAACAGCAACAACACAGATTCCATTTCAAGGATCGACAGGCTTTCGAAACATAAAATGAGCAACCATTTTGATGGTCATGTCAATAATCCAAGCCGTACTCTACCTGATATTTTTGTTCCAAATCACCATATTAAGGGGGGACTAAGTACCTCAAACTCTATGCCCTCCAACAATTTGTTGCCTGTTCTTGGACTTTGTGCTCCTAATGCCAACCAGATGGAATCTTCAGAGAGTAATGTTTCCAAGTTAAATTGGAGACAAAGTAGACAAGGACTCAGACAAGAATTTCCATTCAATCTTGCCTCTTGCTCTGGGACATCCATGGATCCAGAGGTCAGAAATCAGGAAATGCCACCAAATACCAAACTACCAGATGCCGCAGCCGAAAATGTAAAACAAAGTTTCAAAAATAGCATCCCTGATAGCAATCTCCCATTTGTTCCGTTCCCACCTTCTTTAAAAGGAAAGGAGTCCAATGCATTTGAAAAGTCAGGTGCTAGATTCTCTACTTTCCAGGAGAAGATGGCCCTGCCAAATCTGCCATTTGATGAAAGGTTACTGGCACGATTTCCGCTTACAACAAAGAGCATGGCAAATTCACATCTGGACCTCTTACCTAATTTGTCATTAGGAGGCAGGTTTGAGCCTCTGAATGGATCTGGGCAAGACCTTCCATCAATGCCAGCATTACCCACTTTCAAAAATCCCCCTGAAGACTTGTTCAGATATAATCAGCAAGACAGGGACGCACCTCCTAGCCTGGGTTTGGGACAAAGACCAACCACATTCCCGTCTTTCCCAGAAAACCATAGGAAGGTGCTTGAAAACATAATGATGAGAACCGGCTCTGGATCAAGCAGCTCGTTAAAAAAGAAGTCAAAATCAGATGGATGGTCTGAAGATGAGCTCGATTCCCTCTGGATTGGTGTCCGGAGGCATGGAAGGGGTAATTGGGATGTCATGCTCAGGGATCCCAAGTTAAAGTTTTCAAGGTACAAGACAGCTGAAGATTTATCAGGGAGGTGGGAAGAGGAACAAGTCAAGGTCTTTCAGGGGCCAGCTTTTCCTGTGCCAAGGTCATCCAAGATCACAAAGTCTACCAAATCTGCACCTTTTCCAATCTCTGATGGAATGATGGAAAGAGCTTTGCAGGGGAGCAAATTCATCTTGCCACCAAAATTTCAAAACCATTTGACCGACATGAAATTAGGGATAGGTGAGTCTGTGTCTGGTCTGCCGCATTTTAGAACGTTGGATCGACCTGGTTTGCCAAATGATCAGTTTGTGCCACTACCATCTTGGAGTTCTGATAAGCACATGGCAAAACTTCCTGAAGATGGTGCTGCTGAAACATCTGATAGGCCTGGTACTTCTAATGTTCCTCCTGAGCACCGATTTATGCTAAGTTCTTTTGGAGCCAGTTTGGGTTCTTTAGGTTTGAATTGCTCGGGTGGCATTGATATACGGCAGAAGGAAGATGAACAGCGAAACAGGAAGCGAGGAAAGTTACCAGAACTCCTGGATGGATCATCCAACGATTTGCGTGATAATCGTGTAAATGTTGGAAATGGTGAATCAACAGGCTCAGGATTGGCATCTAACCCCATTAGACCTGATCTTTCTCACTCGAAAGGAGATGATGTAGCTGGGAGTAGCACTTCAAAAGACAAGCTTCCACATTGGTTGCGAGAAGCAGTGAGTCCCCCTACCAAACATCCTGATCCTGAACTGCCACCTACAGTATCAGCGATTGCTCAATCAGTTCGCATGTTATATGGAGAAGATAAGTCAACAATTCCTCCATTTGTGATTCCTGGACCACCTCCTTCCTTGCCTAAGGATCCCAGGTCTATTCTCAAGAAGAGGAAGAAGAGAAGGTCGCCTAAGTTTGATCAGGGTCTTGCAGATTTTGCAGGATCAAGCAGGGACTTCCCCAGCAACCGCGATGCTGACAATGGTGCTTCAAGCTCAACTCCATCATTGGGCCCACCATTTCCTCTACTTTCTCAGACAGCAACTCGAGGACCTCAGCAGGTCGAATCCAACCTCAACTTGCCTCCACTAAATTTGAAAGCCGCAAATCCATCACTCTCATCAATGCACCAATCGAAAAAGGCGAGCTCATCAGGACTGTCTCCTTCCCCTGAAGTGCTCCAGTTGGTTGCATCTTGTGTTGCTCCCGGCCCTCACCTTCCACCAGTTTCGGGTGCGTCAAGCTTTCTTGAGGGCAAGCTCCCATTGCCAAGGCCTGTTGCCAGAGCCAAATTCATGGACTCTGAAGATGCCTTTGAAAACAAGGAGGCTCGTCAGGTTTCACCAAGAACTTGGTGTCCTCCTGAAGACGATATAGTAGAACTCCCTGACAGCGGAGATTCCAGCAAGACTCAGTCGGATCCCACCCGGGTTGAACAGCCCGAAGAAGGTGAGGAGGTGTCATCCGAGGGAACAGTCTCGGATCATGCAGCAAGAGATCAGGAAACACAACCGTAG 4242 0.4512 MYNLLNFLQPSSFPSLSSFEEKFNDLTTAEKVDELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSVEFLHEMRIKASAKLTLLHSMLKILHKEGHRVLIFSQMTKLLDILEDYLTIEFGPKTYERVDGSVAVADRQTAIARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEIEDILKWGTEELFNDSPGLNATETNNSNKDETIIDVAHKQRRRTGGLGDVYKDKCTDSSSKIVWDENAISKLLDRSDLQDGSTDIAEGDSENDMLGSVKALEWNDEPAEEHGVDESPPHGTDDLCTQNSEKKDDAAMIANEENEWDRLLRVRWEKYQSEEEAALGRGKRQRKAVSYREAYAPHPTETNSESGGEEEKEPEPEPEREYTPAGRALKTKYAKLRARQKERIARKKAAASRPPEEIPGVESLPQLPAKGGDLGAGAMHPVQEGPSINLPDSKSNQLAEAQVQNSNNTDSISRIDRLSKHKMSNHFDGHVNNPSRTLPDIFVPNHHIKGGLSTSNSMPSNNLLPVLGLCAPNANQMESSESNVSKLNWRQSRQGLRQEFPFNLASCSGTSMDPEVRNQEMPPNTKLPDAAAENVKQSFKNSIPDSNLPFVPFPPSLKGKESNAFEKSGARFSTFQEKMALPNLPFDERLLARFPLTTKSMANSHLDLLPNLSLGGRFEPLNGSGQDLPSMPALPTFKNPPEDLFRYNQQDRDAPPSLGLGQRPTTFPSFPENHRKVLENIMMRTGSGSSSSLKKKSKSDGWSEDELDSLWIGVRRHGRGNWDVMLRDPKLKFSRYKTAEDLSGRWEEEQVKVFQGPAFPVPRSSKITKSTKSAPFPISDGMMERALQGSKFILPPKFQNHLTDMKLGIGESVSGLPHFRTLDRPGLPNDQFVPLPSWSSDKHMAKLPEDGAAETSDRPGTSNVPPEHRFMLSSFGASLGSLGLNCSGGIDIRQKEDEQRNRKRGKLPELLDGSSNDLRDNRVNVGNGESTGSGLASNPIRPDLSHSKGDDVAGSSTSKDKLPHWLREAVSPPTKHPDPELPPTVSAIAQSVRMLYGEDKSTIPPFVIPGPPPSLPKDPRSILKKRKKRRSPKFDQGLADFAGSSRDFPSNRDADNGASSSTPSLGPPFPLLSQTATRGPQQVESNLNLPPLNLKAANPSLSSMHQSKKASSSGLSPSPEVLQLVASCVAPGPHLPPVSGASSFLEGKLPLPRPVARAKFMDSEDAFENKEARQVSPRTWCPPEDDIVELPDSGDSSKTQSDPTRVEQPEEGEEVSSEGTVSDHAARDQETQP 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211469g00015 1413 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 1341 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 455 471 - -
Stsc211469g00015 1413 Gene3D - 56 283 IPR027417 -
Stsc211469g00015 1413 SMART helicmild6 167 252 IPR001650 -
Stsc211469g00015 1413 Pfam SNF2-related domain 2 115 IPR000330 GO:0005524|GO:0140658
Stsc211469g00015 1413 SUPERFAMILY Homeodomain-like 879 928 IPR009057 -
Stsc211469g00015 1413 SMART DUF1087_2 418 479 IPR009463 -
Stsc211469g00015 1413 CDD SANT_TRF 882 926 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 568 588 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 1342 1413 - -
Stsc211469g00015 1413 FunFam chromodomain-helicase-DNA-binding protein 1-like isoform X1 56 283 - -
Stsc211469g00015 1413 Gene3D - 855 952 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 1124 1144 - -
Stsc211469g00015 1413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 141 300 IPR001650 -
Stsc211469g00015 1413 Pfam Helicase conserved C-terminal domain 141 252 IPR001650 -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 400 422 - -
Stsc211469g00015 1413 CDD SF2_C_SNF 136 263 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 1030 1049 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 1384 1413 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 1182 1298 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 1073 1144 - -
Stsc211469g00015 1413 Pfam CHD subfamily II, DUF1087 435 473 IPR009463 -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 1229 1298 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 455 588 - -
Stsc211469g00015 1413 Gene3D - 2 55 IPR038718 -
Stsc211469g00015 1413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 309 IPR027417 -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 1073 1096 - -
Stsc211469g00015 1413 MobiDBLite consensus disorder prediction 1097 1120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211469g00015 Stsc-Chr211469 76005 82220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211469g00015 153 282 RAD5 or RAD16-like Gene Family AT1G61140 39.231 1.41e-21 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc211469g00015 Helicase_C 4.7e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211469g00015 - - gmx:100793933 2170.2