Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211469g00011 ATGGCAGAAGCGGCGGGGCCTTCATCGCCCGCGCCAATCTCGGCTAAGCGTCGGCGCGTGACGAACGTCCCGGAGGACCTCGACTTCGAGACGACGGAGGGCGTAAAGGCTATCGCCAGTTTCGAGGAAATGGGGATCAAGGAGGAGCTCCTCCGCGGGATCTACCAGTACGGCTTCGAGAAGCCTTCAGCTATTCAGCAACGTGCCGTCATGCCAATCATCCAGGGTCGTGACGTCATTGCCCAGGCCCAGTCCGGCACCGGCAAGACCTCCATGATCGCCCTCACCGTCTGTCAGCGCGTCGAGACTTCCCTTCGCGAGGTTCAGGCGTTGATATTGTCGCCGACGAGGGAGCTGGCGGCGCAGACGGAGAAGGTGATATTGGCGATTGGGGATTTCATAAACATTCAGGCGCACTCGTGCATTGGAGGGAAGAGCGTTGGGGAAGATATAAGGAAGCTGGAGCATGGTGTTCATGTGGTGTCAGGAACCCCTGGACGGGTCTGTGACATGATCAAAAGGAGGACTTTGCGCACCAGAGATATCAAGATGCTGGTTCTGGATGAATCTGACGAGATGTTAAGCAGAGGGTTTAAGGATCAAATTTATGATGTGTATAGGTATCTGCCACCAGAACTTCAGGTTGTCTTGATTTCTGCCACTCTCCCTCATGAAATACTGGAGATGACAAGTAAATTCATGACAGATCCTGTAAGGATCCTTGTAAAACGTGATGAATTGACACTGGAGGGCATCAAGCAATTCTTTGTTGCAGTTGAACGGGAAGAATGGAAGTTTGATACTCTATGTGATCTGTATGATACCCTTACTATCACTCAGGCTGTTATATTTTGTAACACTAAACGAAAGGTGGATTGGTTAACTGAAAAAATGCGTAGCAATAATTTCACTGTGTCGGCAATGCATGGAGACATGCCACAGAAAGAAAGAGATGCAATTATGACAGAATTCNNNNNNNNNNCTACTCGTGTGCTAATAACGACGGATGTTTGGGCTCGTGGCATTGATGTTCAGCAGGTTTCTCTAGTCATCAACTATGACCTTCCAAATAATCGTGAGCTATACATTCATCGAATAGGCCGCTCTGGGCGTTTTGGACGCAAGGGTGTTGCAATAAACTTTGTCAAGAGTGATGATATCAAGATCTTGAGAGATATTGAGCAATATTATAGTACTCAGATTGATGAAATGCCAATGAACGTGGCTGATCTTATATAA 1239 0.4786 MAEAAGPSSPAPISAKRRRVTNVPEDLDFETTEGVKAIASFEEMGIKEELLRGIYQYGFEKPSAIQQRAVMPIIQGRDVIAQAQSGTGKTSMIALTVCQRVETSLREVQALILSPTRELAAQTEKVILAIGDFINIQAHSCIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRDIKMLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMTEFXXXXTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211469g00011 412 CDD SF2_C_DEAD 252 382 - -
Stsc211469g00011 412 Pfam Helicase conserved C-terminal domain 265 373 IPR001650 -
Stsc211469g00011 412 Gene3D - 25 243 IPR027417 -
Stsc211469g00011 412 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 251 412 IPR001650 -
Stsc211469g00011 412 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 395 - -
Stsc211469g00011 412 CDD DEADc_EIF4AIII_DDX48 41 241 - -
Stsc211469g00011 412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 395 IPR027417 -
Stsc211469g00011 412 Gene3D - 244 412 IPR027417 -
Stsc211469g00011 412 Pfam DEAD/DEAH box helicase 64 226 IPR011545 GO:0003676|GO:0005524
Stsc211469g00011 412 FunFam Eukaryotic initiation factor 4A-III 246 412 - -
Stsc211469g00011 412 SMART helicmild6 292 373 IPR001650 -
Stsc211469g00011 412 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 39 67 IPR014014 GO:0003724
Stsc211469g00011 412 FunFam Eukaryotic initiation factor 4A-III 22 243 - -
Stsc211469g00011 412 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 240 IPR014001 -
Stsc211469g00011 412 SMART ultradead3 58 255 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211469g00011 Stsc-Chr211469 51658 54896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211469g00011 25 412 Eukaryotic Initiation Factors Gene Family AT3G19760 87.887 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211469g00011 K13025 - gmx:100795032 734.561