Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211468g00027 ATGTGCAGTGGTTCAAAAAGTAAGCTTTCTCCCTCTGATAAAGTCATGGGAAGTGAGATTCAGAAGCAGAATCAGGATGGTGTCCATAACTTGTCAGCTTTGCTTGAGCTGTCTGCATCCGATGATTTCGAAGCTTTCAGAAGAGAAGTGGAAGAGAAGGGTCTTGATGTAAACGAGGCTGGCTTTTGGTATGGGAGAAGAATCGGATCAAAGAAGATGGGATTCGAGGAGAGGACCCCTCTCATGATTGCTTCACTGTTTGGAAGCACAAGGGTGCTGAAGTATATTGTTGAGTCAGGCATGGTTGATGTGAACAGGGCCTGTGGTTCTGATAGGGCAACTGCTCTCCACTGTGCTGTTGCTGGGGGCTCTGAATCCTCCCTTGAGATCGTCAAGCTGTTGCTCGATGCCCATGCTGATGCCGATTGCGTTGATGCTAGTGGTAATAAGCCAGTTAATCTGATTGCGCCTGCCTTCAATTCTTTGTCCAGTTCAAGAAGGAAGGCCATGGAGTTGTTTCTAAGAGGTGGTGAAAGAGATCAGCTTTTCAACCAAGAGATGGAACAACAGTTGCTCTCTTCTTTCTCATTGAAAGAAGGATTGGAGAAAAGGGAAGGAGCTGATAAGAAAGAATATCCGGTTGATATTTCGCTGCCGGACATCAACAACGGTGTCTATGGAACTGATGAGTTCAGGATGTACAGCTTCAAGGTGAAGCCATGCTCAAGGGCCTATTCCCATGATTGGACCGAGTGCCCATTTGTTCATCCAGGGGAGAACGCAAGGAGGAGAGACCCGCGCAAATACCCTTACAGCTGTGTTCCCTGCCCAGAATTCCGCAAAGGGTCCTGCCAGAAGGGGGNNNNNNNNNNACATGGTGTTTTTGAGTCCTGGCTTCACCCTGCTCAGTACAGAACGAGGCTTTGCAAGGATGAGACTGGCTGTGGCAGAAAAGTCTGCTTCTTTGCTCACAAACCCGAGGAGTTACGTCCTGTATATGCTTCCACTGGCTCAGCTATGCCTTCACCAAAATCTTACTCAGCCAGTGGACTTGACATGACGGCAATGAGTCCTCTTTCGCTTAGTTCCACATCTTTGCCTATGCCAACCGTTTCAACACCACCCATGTCTCCCTTGGCAGCTTCTTCATCTCCCAAGAGTGGAAGCTTGTGGGCAAACAAAATAAACCTTACCCCACCATCATTGCAGCTCCCTGGCAGCCGCTTGAAGACTGCTATGAGTGCCAGGGATTTCGACATGGAGATGGAGCTGTTGGGTCTAGACAGCCCTGCACGTCAGCAGCAGCAGCAGCAGCAGCAACAACTAATTGAGGAGATTGCAAGGATCAATTCTCCATCTTTCAGGAGCAGGATTGGTGACTTGAATCCCACTAACCTAGATGACCTATTAGCAGCTGCTGACCCTTCTCTGCTGTCTCAATTGCATGGAATCTCGGCTCAACCTTCTACTCCTACTCAATTGCAATCATCGATGCGACAAAACATGAACCATCTTCGGGCAAGTTATCCATCCAATGTCACTTCCTCACCAGTGAGGAAACCCTCAGCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAGCCGCAGTGATGAATTCAAGGTCTGCAGCCTTTGCAAAGCGAAGCCAAAGCTTTATTGACCGCAGTGCTGCAAACCACCACATTGGGTTGTCTTCGCCCTCCAACCCCAGCTGCAGGGTCTCCTCTGGCCTTTCAGACTGGAGTTCCCCCTCTGGGAAACTTGATTGGGGTGTGAATGGAGATGAACTGAATAAGCTGAGGAAATCAGCTTCTTTTGGATTCAGAAACAATGGGGCACCAATTGCCTCCCCTTTGGCACAGTCAGAACATGTTGAGCCGGATGTCTCATGGGTTCATTCATTGGTTCCTTCTGAAAGTTCGGAGATATTTGGTGCTGAGAAGAAGCAGCAGCAGCAATATGATCTCAGTAAAGAGAGGCTTCCACCATGGGTGGAGCAGTTGTATATAGAGCAGGAGCAAATGGTAGCATAA 2031 0.485 MCSGSKSKLSPSDKVMGSEIQKQNQDGVHNLSALLELSASDDFEAFRREVEEKGLDVNEAGFWYGRRIGSKKMGFEERTPLMIASLFGSTRVLKYIVESGMVDVNRACGSDRATALHCAVAGGSESSLEIVKLLLDAHADADCVDASGNKPVNLIAPAFNSLSSSRRKAMELFLRGGERDQLFNQEMEQQLLSSFSLKEGLEKREGADKKEYPVDISLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGXXXXHGVFESWLHPAQYRTRLCKDETGCGRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTAMSPLSLSSTSLPMPTVSTPPMSPLAASSSPKSGSLWANKINLTPPSLQLPGSRLKTAMSARDFDMEMELLGLDSPARQQQQQQQQQLIEEIARINSPSFRSRIGDLNPTNLDDLLAAADPSLLSQLHGISAQPSTPTQLQSSMRQNMNHLRASYPSNVTSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRSAANHHIGLSSPSNPSCRVSSGLSDWSSPSGKLDWGVNGDELNKLRKSASFGFRNNGAPIASPLAQSEHVEPDVSWVHSLVPSESSEIFGAEKKQQQQYDLSKERLPPWVEQLYIEQEQMVA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211468g00027 676 SUPERFAMILY Ankyrin repeat 27 153 IPR036770 -
Stsc211468g00027 676 Gene3D - 7 203 IPR036770 -
Stsc211468g00027 676 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211468g00027 676 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Stsc211468g00027 676 PANTHER UNKEMPT FAMILY MEMBER 36 635 IPR045234 -
Stsc211468g00027 676 MobiDBLite consensus disorder prediction 360 385 - -
Stsc211468g00027 676 SMART ANK_2a 76 106 IPR002110 GO:0005515
Stsc211468g00027 676 SMART ANK_2a 111 143 IPR002110 GO:0005515
Stsc211468g00027 676 FunFam Zinc finger CCCH domain-containing protein 29 21 182 - -
Stsc211468g00027 676 Pfam Ankyrin repeats (3 copies) 72 142 IPR002110 GO:0005515
Stsc211468g00027 676 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211468g00027 Stsc-Chr211468 238775 241991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211468g00027 29 671 C2H2 Transcription Factor Family AT5G12850 38.418 5.39e-138 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211468g00027 - - gmx:100783376 978.008