Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211468g00021 ATGAAGATTCCGGCCGCCGCCACCTCCGCTGTTATCTCCGTCTTGTTCATTTTCTCCATAATAATACCTTCTTTATCCGCCCTTGGCTCAGGAACCACCCTCGCCGTAACCGACGCCTCCTCCGCCACCGTCTGCGGCGTTGTTGCGGCGTCACAGACCCGCCGAATCCAGTGCTACCGCCGGGGAAGCGGCGGAGCAATTGTCCCCGTCTACCCCGACGTTTCATTCTCTTCAATCTCCGGCGGTCGGAGCTACTTCTGCGGCCTCCGTTCCGGCAACTACAGCCTCCTCTGCTGGGACACCACCGCCACCAACGCCACCACGTTCGAAAGCAAGCGACTTTACAACAATGACACTGTTCTATTCGAGAATCTCGCCGTCGGGGACTCCCAGGTTTGCGCCACCGTTGTCGGAACCGGAACGGCGTCGTGTTGGAGAGCGGGTAGAAGCAAAGGTTCGTACTTTTCATCTGGGTCGGATCGGTTCGAGTCCATATCATCCGGGTCTGGTTTTTCATGCGGTATTATGAAGGAAAGTTTTCGAATTCGATGTTGGGGAAGTAACGTTTCGGTTGCAGATTCCATAGAGAGAGAGTTTCGAAACGTTTCGATGTTGAGCATTGTGGCTGGCGGTTCACACTTGTGTGGTTTGAATTCAACTGGGTTTTTGGTTTGTAAAGGAAGTAACAGTTTTGGGCAAATTGAGGTTCCTCATCAAGGTGTTGCTTTTGAGTATTCTGGTTTGGCTCTCGGTGATTATCACACTTGTGCTATTAGAAGATCCAATGGTTCTGTTTTCTGTTGGGGTGGCAATGGAGATTATTTCAATGCTAATTTCACAAAAGGTGTGTCTTTTGAAGTTATTGTTTCTGTTTCTGATTTTGTCTGTGGATTGACGACAAGAAATTTCTCTGTTTTGTGTTGGGGTCCTGGTTGGTCTAATAATGGTTCTGCTTCTGATTTTGAGGTTCCTTTTTTGTCTCCGATTCTTCCGGGTCCTTGTGTTCAATCTTCTTGCAGTGAGTGTGGTATCTATCCTCAATCTCAATTCTTGTGTTCTGGTTTTGGTAACATTTGTAGGCCTAAGCCTTGTGGGCCTCAAGTGCCGGTGATCCCGGCGAGGCCTCCCGCGGTGGTGCCATTGCCATTGCCTCCCCCGCCGTCTTCTCGGTCGAAGACCTTGACAACGGGGTTGTTGGCATTTGCCATAGTTGGATCAGTGGGTGCTATTGCTGGAATTTGCACTGTGCTTTATTGTTTCTGGAATGGTGTTTGTTTTGGGAAGAAGAAAATTCATAATTCTGTTCAACCAACAATAACTAGAGGTGGCAGTTCCAATAATGGTGGTGGGGCTGTTCAATCTAATAGCCCGCCGTCGATATCATTGACCATTAAGCGTCAGGGATCGAGGATAATGCGGCGGCAGAGAAGTGGAACCTCGTCGACGAAACCTCCAGACAGGGCTGAGGAGTTCACACTAGCTGAGCTTAGTGCTGCAACCAATAATTTTTCAATGGAGAACAAGATTGGCGCCGGGAGCTATGGCATTGTGTACCGAGGAAAACTCGCGGATGGCCGCGAGGTGGCGATCAAGAGAGGGGAAACAGGTACCAAGATGAAGAAGTTTCAAGAGAAAGAGAGTGCATTTGAGTCAGAATTGGCCTTCTTGTCAAGATTACACCACAAGCATTTGGTTAGGCTAGTTGGATTCTGTGAAGAGAAAGATGAGAGGCTCTTAGTTTATGAATACATGAAGAATGGAGCATTGTATGATCATTTGCATGACAAGAACAATGTGGATAAGAATAGTAGTGTCTTGAATTCTTGGAGAATGAGGATCAAAATCGCCTTGGACGCTTCGCGAGGGATAGAGTATCTCCATAATTATGCAGTTCCGTCGATAATTCACCGAGATATCAAGTCTTCCAACATTCTCATTGATGCCACTTGGACAGCAAGAGTATCCGATTTCGGATTGTCATTGATGAGTCCGGAATCCAATCTTGATTACCGGCCAACAAAGGCAGCCGGAACGGTTGGATACATCGATCCTGAGTACTACGGTCTAAATGTATTGACAGCAAAGAGTGATGTCTATGGTCTTGGAGTGGTGTTGCTAGAACTCTTAACTGGAAAGCGAGCCATATTCAAAATCGACGAAACTGGAGGCGCCCCGGTGAGCATAGTGGACTTTGCAGTGCCTGCTATCAAGACCGGGGAATTGGCAAAAATATTGGACCCGAGGGTTGCCCCGCCGGAGATGAGCGAAATGGAAGCTGTGGAGCTTGTGGCCTACACTGCCATGCATTGTGTAAATTTGGAAGGAAAGGATAGACCAACAATGGCTGACATTGTGGCCAATTTGGAGCGAGCTTTGGCCCTTTGTGAGAGCAGTAGCCATGGTAGCATTTCTAGTGGTACAATCTCAATTGTATCAGAATAA 2442 0.4795 MKIPAAATSAVISVLFIFSIIIPSLSALGSGTTLAVTDASSATVCGVVAASQTRRIQCYRRGSGGAIVPVYPDVSFSSISGGRSYFCGLRSGNYSLLCWDTTATNATTFESKRLYNNDTVLFENLAVGDSQVCATVVGTGTASCWRAGRSKGSYFSSGSDRFESISSGSGFSCGIMKESFRIRCWGSNVSVADSIEREFRNVSMLSIVAGGSHLCGLNSTGFLVCKGSNSFGQIEVPHQGVAFEYSGLALGDYHTCAIRRSNGSVFCWGGNGDYFNANFTKGVSFEVIVSVSDFVCGLTTRNFSVLCWGPGWSNNGSASDFEVPFLSPILPGPCVQSSCSECGIYPQSQFLCSGFGNICRPKPCGPQVPVIPARPPAVVPLPLPPPPSSRSKTLTTGLLAFAIVGSVGAIAGICTVLYCFWNGVCFGKKKIHNSVQPTITRGGSSNNGGGAVQSNSPPSISLTIKRQGSRIMRRQRSGTSSTKPPDRAEEFTLAELSAATNNFSMENKIGAGSYGIVYRGKLADGREVAIKRGETGTKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVDKNSSVLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESNLDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKIDETGGAPVSIVDFAVPAIKTGELAKILDPRVAPPEMSEMEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALALCESSSHGSISSGTISIVSE 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211468g00021 813 Gene3D - 195 343 IPR009091 -
Stsc211468g00021 813 MobiDBLite consensus disorder prediction 439 486 - -
Stsc211468g00021 813 Pfam Regulator of chromosome condensation (RCC1) repeat 249 273 - -
Stsc211468g00021 813 FunFam serine/threonine-protein kinase-like protein CCR1 472 583 - -
Stsc211468g00021 813 Gene3D Phosphorylase Kinase; domain 1 465 583 - -
Stsc211468g00021 813 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 200 799 IPR044815 GO:0004674
Stsc211468g00021 813 SMART serkin_6 503 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211468g00021 813 Gene3D - 22 194 IPR009091 -
Stsc211468g00021 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Stsc211468g00021 813 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Stsc211468g00021 813 Gene3D Transferase(Phosphotransferase) domain 1 584 803 - -
Stsc211468g00021 813 SUPERFAMILY RCC1/BLIP-II 67 314 IPR009091 -
Stsc211468g00021 813 SUPERFAMILY Protein kinase-like (PK-like) 481 788 IPR011009 -
Stsc211468g00021 813 Pfam Protein kinase domain 504 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211468g00021 813 ProSiteProfiles Protein kinase domain profile. 503 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211468g00021 813 FunFam Serine/threonine-protein kinase-like protein CCR4 584 805 - -
Stsc211468g00021 813 MobiDBLite consensus disorder prediction 439 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211468g00021 Stsc-Chr211468 160063 162504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211468g00021 9 813 Receptor kinase-like Gene Family AT3G55950 59.179 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc211468g00021 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211468g00021 - - gmx:100798905 1154.43