Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211468g00004 ATGTCTCTCATCGTATATCTCCTATGTATAGCTTCATTAACCTTGGCTGTTCATGTACCCTTAAGTTCAGAGACCGATAAGATTTCTTTGCTTGCTTTGAAAGACAAGCTAACCAATGGTGACCCTCATGCTCTACCATCATGGAATCAGTCTCTTCATTTCTGTGGATGGGAGGGCATTACATGCAGCCGCCGCCGAATGAGAGTCTCAGCCTTGCAACTTCAAAATCAAGACTGGGGTGGAACTCTTTCCCCATCCTTGGGAAATCTAACGTTCCTAAGGGTGATCAGTCTTACTAACATCAACTTGCATGGTGAGATTCCAAGAGAAGTTGGCCATTTAAAGAGGTTGCAGATTCTTGACTTGACGCAAAATAATCTTCATGGTCAGATTCCTACGGAGATGATAAATTGTTCAAGCCTTCAAATAATTAGATTGTTTTACAATAATCTAACTGGCAAAATTCCTTCATGGTTTGGTTCTATGATGCAACTCACTGAACTCGGGCTTGGAGCCAACAATTTTGTTGGTAGTATCCCAGCTTCTTTGGGAAATGTTTCATTGCTTGAGAAGTTGTCACTTGCAGAAAATCATTTGGAAGGAACCATAACTCCAGCCATGGGTAGGATGTTGAATTTGAATTTTTTGGCTTTGGGTGCAAATAATTTTTCAGGCCACGTCCCTCCTTCACTTTACAACCTTTCAAATATTCGCGTGCTTTCATTATCGGCAAATCAGTTAGTAGGTACTCTTCTCCCAAATATACCCATGGCTTTTCCCCGTCTTGAGATATTTGAGTGTGGAGGGAACGGATTCACCGGTACTTTCCCATCTTCAATATCTAACCTTTCTGAATTGCAACAGTTTGATATATCCAAAAATAGTTTTCATGGGCCAGTTTCTCCGACCTTAGGAAGTTTACACAAACTTCAGATATTTAGTATCAGTCATAACAGATTTGGGAGTGGAAGAGTTCACGATTTGGATTTCCTTTCCTCATTAGGAAATTGCACTCAATTGCAAAAATTGAACATTCGTGAAAATTATTTAGGCGGTGTATTGACAGACATCATTGGCAACTTATCAATCAATCTTGATTGGTTTACTATGGGGTCTAATCAAATATCCGGAAAGATACCTGAAGGAATTGGAAAACTAATCAACCTAGAAGCACTTGGTATGGAGGACAATTCCCTTGAGGGAGTAATTCCAAATTCAATTGGAAAACTAAAGAATCTGGTAGAATTGACGTTGGGGAGAAATAAGTTGTTTGGCAACATTCCTCTTGTCATTGGTAACCTTACCATGTTGTCTTTAGTTGGTCTGGAGTCAAACAAATTTGAAGGATCCATTCCTTTTACACTTGGAAATTGCACCAAGATGGAGAGATTTTATGCTAATAATAACTACTTAAGTGGTAATATACCCATTCAAACATTTGGCTACCAAAAAGGTTTGATAGAACTTTACCTATTTTCCAACTCCTTTACTGGCCCCATTCCTTCTGATCTTGGTAACTTGAACCATCTTTCCATCTTGCATTTGGCAGAAAATAAGTTGGTCGGTGATATTCCCATGGGACTTAGTGCTTGCGTTTCTTTAACTGAGGTTGTGCTAGAAAGAAACTCGTTCAATGGAAGTATACCTTCATTCCTAGGATCTCTACTATCCCTTGAAATTTTAGATCTTTCTAATAACAACTTCTCAAGCACAATCCCGTATGAACTTGTGAATCTCACGTTGCTGAATAATTTGAACTTATCTTTCAACAATCTCTCTGGTGAAGTCCCTGTAGGAGGGGTATTTAATAACATCACAGCAATATCACTCACTGGAAACAAACATCTTTGTGGTGGGATACCTCAATTGAATCTTCCTCCATGCCCTGTTTTGCCTTTACAGAAGAAACACAAGAGATCTGTTAAGAAGAAAATCATCCTTGCCATTGCATTTGGAGGGGTTCTAATCACTTTTATAACTCTTTTCGGTATATATCTTCTCAAGAAAAAGGCAAAAAAGTTATCCATTACATCCCTAGCTTTGCAATATGGCTATGTGAAGGTTTCCTATGGAGAGCTACATCAAGCAACCAATGGATTTTCTTCATCCAATTTAGTTGGCGTAGGAAACTTTGGTACTGTGTATAGAGGAACCCTTATCCACTTTGAGAGGCCTATTGCTGTAAAAGTGTTGAATCTTCAAACACATGGGGCATTGAAAAGTTTCTTAACTGAATGCAGAGCTCTAGGAAAAATCAAACACAGAAACGTTCTCAGCATACTAACTTGTTGTTCAAGTGTTGATTACAAAGGAAATGATTTCAAGGCCATAGTGTTTGAGTTCATGCCTAATGGGAGTCTAGAAACCTTGTTGCACAACACTATTGAAGATAGTGAGTCCACAAATCTAAGTCTCAACTTTGTACAGAGGGTAAATATTGCTCTTGATGTCGCTATTGCATTGGATTACCTTCACAATGATACAGGTGAAGCTATAGTTCACTGTGATGTTAAGCCAAGTAACGTTCTGCTTGATGATGAATTTGTTGCCCACTTGGGAGACTTTGGATTAGCTAGACTAATTCTTGGGGCAAGAAGCTATTCTAGCAGTGATCAAGGAAAGTACGGGGCAGGTGGGTCAGTATCAGCACAAGGAGACATCTATAGCTATGGAATTCTTCTTTTGGAAATACTGACCGGAAAGAGACCAATGGATGCCATGTTTGGTGAAGGTCTAAGCCTACACAAGTTTTGTAAAATGGCAATTCCAGAAGGAATCACTGAGATTGTTGATTCAAGATTGCTGACTCCATGTGATGAAGGAGAAAGAACTCAAAGAAGGATCACACAACAGCAAAACATTGAGGAGTGTTTGGTGTCCTTTGCTAGGATTGGAGTTGCATGTTCTCAAGAGTCTCCCACTCAACGGATGAGCATTAAGGATGTCATAATGGAGCTTCATGCAATTAAACAGAAACTGCTTCCATAG 2988 0.3932 MSLIVYLLCIASLTLAVHVPLSSETDKISLLALKDKLTNGDPHALPSWNQSLHFCGWEGITCSRRRMRVSALQLQNQDWGGTLSPSLGNLTFLRVISLTNINLHGEIPREVGHLKRLQILDLTQNNLHGQIPTEMINCSSLQIIRLFYNNLTGKIPSWFGSMMQLTELGLGANNFVGSIPASLGNVSLLEKLSLAENHLEGTITPAMGRMLNLNFLALGANNFSGHVPPSLYNLSNIRVLSLSANQLVGTLLPNIPMAFPRLEIFECGGNGFTGTFPSSISNLSELQQFDISKNSFHGPVSPTLGSLHKLQIFSISHNRFGSGRVHDLDFLSSLGNCTQLQKLNIRENYLGGVLTDIIGNLSINLDWFTMGSNQISGKIPEGIGKLINLEALGMEDNSLEGVIPNSIGKLKNLVELTLGRNKLFGNIPLVIGNLTMLSLVGLESNKFEGSIPFTLGNCTKMERFYANNNYLSGNIPIQTFGYQKGLIELYLFSNSFTGPIPSDLGNLNHLSILHLAENKLVGDIPMGLSACVSLTEVVLERNSFNGSIPSFLGSLLSLEILDLSNNNFSSTIPYELVNLTLLNNLNLSFNNLSGEVPVGGVFNNITAISLTGNKHLCGGIPQLNLPPCPVLPLQKKHKRSVKKKIILAIAFGGVLITFITLFGIYLLKKKAKKLSITSLALQYGYVKVSYGELHQATNGFSSSNLVGVGNFGTVYRGTLIHFERPIAVKVLNLQTHGALKSFLTECRALGKIKHRNVLSILTCCSSVDYKGNDFKAIVFEFMPNGSLETLLHNTIEDSESTNLSLNFVQRVNIALDVAIALDYLHNDTGEAIVHCDVKPSNVLLDDEFVAHLGDFGLARLILGARSYSSSDQGKYGAGGSVSAQGDIYSYGILLLEILTGKRPMDAMFGEGLSLHKFCKMAIPEGITEIVDSRLLTPCDEGERTQRRITQQQNIEECLVSFARIGVACSQESPTQRMSIKDVIMELHAIKQKLLP 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211468g00004 995 Gene3D Transferase(Phosphotransferase) domain 1 782 993 - -
Stsc211468g00004 995 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 63 330 - -
Stsc211468g00004 995 Gene3D Ribonuclease Inhibitor 326 632 IPR032675 -
Stsc211468g00004 995 FunFam LRR receptor-like serine/threonine-protein kinase EFR 331 633 - -
Stsc211468g00004 995 Gene3D Ribonuclease Inhibitor 25 134 IPR032675 -
Stsc211468g00004 995 Gene3D Ribonuclease Inhibitor 135 185 IPR032675 -
Stsc211468g00004 995 SUPERFAMILY L domain-like 364 618 - -
Stsc211468g00004 995 SUPERFAMILY Protein kinase-like (PK-like) 681 986 IPR011009 -
Stsc211468g00004 995 Pfam Protein tyrosine and serine/threonine kinase 704 984 IPR001245 GO:0004672|GO:0006468
Stsc211468g00004 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Stsc211468g00004 995 Gene3D Ribonuclease Inhibitor 186 325 IPR032675 -
Stsc211468g00004 995 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 782 995 - -
Stsc211468g00004 995 PANTHER OS04G0122200 PROTEIN 98 206 - -
Stsc211468g00004 995 ProSiteProfiles Protein kinase domain profile. 700 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211468g00004 995 SUPERFAMILY L domain-like 24 320 - -
Stsc211468g00004 995 Gene3D Phosphorylase Kinase; domain 1 663 781 - -
Stsc211468g00004 995 SMART serkin_6 700 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211468g00004 995 SMART LRR_typ_2 410 434 IPR003591 -
Stsc211468g00004 995 SMART LRR_typ_2 114 138 IPR003591 -
Stsc211468g00004 995 SMART LRR_typ_2 555 579 IPR003591 -
Stsc211468g00004 995 SMART LRR_typ_2 386 409 IPR003591 -
Stsc211468g00004 995 SMART LRR_typ_2 507 531 IPR003591 -
Stsc211468g00004 995 SMART LRR_typ_2 234 261 IPR003591 -
Stsc211468g00004 995 FunFam LRR receptor-like serine/threonine-protein kinase EFR 670 781 - -
Stsc211468g00004 995 ProSitePatterns Protein kinases ATP-binding region signature. 706 729 IPR017441 GO:0005524
Stsc211468g00004 995 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Stsc211468g00004 995 ProSiteProfiles Leucine-rich repeat profile. 557 580 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211468g00004 Stsc-Chr211468 15695 19040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211468g00004 21 994 Receptor kinase-like Gene Family AT3G47570 42.814 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc211468g00004 PK_Tyr_Ser-Thr 5.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211468g00004 - - ahf:112766919 1453.73