Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211468g00003 ATGAGAGTCTCAGCATTGAAACTACAAGATCAACACTGGGGTGGTACTCTTGCACCATTCTTGGGAAATCTAACATTCCTCATGGAGATCAATCTTACTAACATCAACTTGCATGGTGAGATTCCAAGAGAAATTGGTCATTTAAAGAGGTTGCGGATTTTTAACTTGAGACATAATAATCTTCATGGTCAGATTCCTGTAGAGATGATAAATTGTTCAAGCCTTGAGGTAATTTTATTGTCATACAATAATCTAACTGGCAAAGCTCCTTCATGGTTTGGTTCTATGATAAAAATCACAAAACTGGGGCTTGCAGTCAACGGTTTTGTTGGTGATATCCCGCCCTCTTTGGGAAATCTTTCATCCCTTCAAGTGTTGTCACTTGCATACAATTATTTGGAAGGAACCATAAGTCAAGCTTTGGGTAGGTTGTCAAATTTGACATTTTTGTATTTGGGTGCAAACAATTTTTCTGGCCATGTCCCTCCTTCATTTTACAACCTTTCAAGTATTGAAGTTCTTTCATTGTCAGAAAACCAGTTAGTGGTCCCGGTAGGAGGATTATTTAAAAACATCACAGCAATATCACTCACCAGAAACAAAGATCTTTGCGGTGGAGTTCCTCAATTGAATCTTCCTCCATGCCCTGCAATGTCTAAGCAGAAGAAACACAAGAGATCTATTAAGAAGAGAGTCATCCTCAGCATTACATTTGGAGAAGTTCTAATCACTTCTGTAACTTTTATCAGTATATATCTTCTCAAGAAAAAGGCAAAAAAGTTGTCCATTAAATCCCTAGCTTTGCAATATGGCTATGTGAAGGTTTCCTATGGAGAACTACATCATGCAACCAATGGATTCTCTTTGTCCAATTTAGTTGGCACAGGAAACTTTGGTACTGTGTATAAAGGAACCCTTGTCCATTTTGAGAGACCTATTGCTGTAAAAGTGTTGAATCTTCAAACACATGGGGCGTTGAAGAGTTTCCTAGCTGAATGCAGAGCTCTAGGAAAAATCAAGCACAGAAACCTTGTCAGCATACTGACTTGTTGTTCAAGTGTTGATTACAAAGGCAACGATTTCAAGGCTATAGTGTTTGAGTTCATGCCTAATGGGAGTCTAGAATCCTTGTTGCACAACACTATTGAAGATGGTGAGTCCGCAAATCTAAGTCTCAACTTTGTACAGAGGGTAAATATTGCACTTGATGTGGCTTTTGCATTGGATTATCTTCACAATGATTCAGGGGAAGCAATAGTTCACTGCGATGTTAAGCCAAGTAATGTTCTGCTTGATGATGAAGTTGTTGCTCACTTGGGAGACTTTGGATTAGCTAGACTCATTCATGGTGCTGCAAGCCATTCTAGCAGTGGTCAAGCAAGCTCCTCTACAATTAAGGGAACCATTGGATATATTCCACCAGAGTATGGAGGAGGTGGCTCAGTGTCAAGAGAAGGAGACATGTATAGCTATGGAGTTCTTCTTTTGGAGATGCTTACTGCCAAGAAGCCAACTGATAGCATATTTGGCGAAGGTCTAAACCTTCGCAATTTCTGTAACATGGCAACGACAGAAGGTATCATTGAGATTGTTGATTCAAGATTGCTCATTCCAATTGATGAACAAGATCAGGGAAGAAGGGTCATCACAAGGCAGCAAAATATGGAAGACATTGTTCGAGAGTGTCTTGTGTCGTTTGCTAGGATTGGAATTGCATGTTCTGAAGAATCTGCCTCTCAACGAATGGGCATAAAAAATGTCATCATGGAGTTACATGCAATTAAACAGAAGCTGCTTTCATAA 1803 0.3955 MRVSALKLQDQHWGGTLAPFLGNLTFLMEINLTNINLHGEIPREIGHLKRLRIFNLRHNNLHGQIPVEMINCSSLEVILLSYNNLTGKAPSWFGSMIKITKLGLAVNGFVGDIPPSLGNLSSLQVLSLAYNYLEGTISQALGRLSNLTFLYLGANNFSGHVPPSFYNLSSIEVLSLSENQLVVPVGGLFKNITAISLTRNKDLCGGVPQLNLPPCPAMSKQKKHKRSIKKRVILSITFGEVLITSVTFISIYLLKKKAKKLSIKSLALQYGYVKVSYGELHHATNGFSLSNLVGTGNFGTVYKGTLVHFERPIAVKVLNLQTHGALKSFLAECRALGKIKHRNLVSILTCCSSVDYKGNDFKAIVFEFMPNGSLESLLHNTIEDGESANLSLNFVQRVNIALDVAFALDYLHNDSGEAIVHCDVKPSNVLLDDEVVAHLGDFGLARLIHGAASHSSSGQASSSTIKGTIGYIPPEYGGGGSVSREGDMYSYGVLLLEMLTAKKPTDSIFGEGLNLRNFCNMATTEGIIEIVDSRLLIPIDEQDQGRRVITRQQNMEDIVRECLVSFARIGIACSEESASQRMGIKNVIMELHAIKQKLLS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211468g00003 600 FunFam Piriformospora indica-insensitive protein 2 90 186 - -
Stsc211468g00003 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Stsc211468g00003 600 Gene3D Ribonuclease Inhibitor 2 224 IPR032675 -
Stsc211468g00003 600 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 89 - -
Stsc211468g00003 600 ProSitePatterns Protein kinases ATP-binding region signature. 293 316 IPR017441 GO:0005524
Stsc211468g00003 600 Pfam Protein kinase domain 289 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211468g00003 600 SUPERFAMILY Protein kinase-like (PK-like) 269 593 IPR011009 -
Stsc211468g00003 600 PANTHER OS04G0122200 PROTEIN 5 598 - -
Stsc211468g00003 600 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 369 600 - -
Stsc211468g00003 600 SUPERFAMILY L domain-like 5 203 - -
Stsc211468g00003 600 FunFam LRR receptor-like serine/threonine-protein kinase EFR 256 368 - -
Stsc211468g00003 600 Gene3D Phosphorylase Kinase; domain 1 248 368 - -
Stsc211468g00003 600 ProSiteProfiles Protein kinase domain profile. 287 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211468g00003 600 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Stsc211468g00003 600 SMART serkin_6 287 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211468g00003 600 Gene3D Transferase(Phosphotransferase) domain 1 369 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211468g00003 Stsc-Chr211468 11055 13311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211468g00003 1 599 Receptor kinase-like Gene Family AT3G47570 40.722 3.35e-139 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc211468g00003 Pkinase 1.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211468g00003 - - ahf:112766919 691.419