Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211467g00026 ATGGCTGAATCACCTGAATCAGATGAAAAGTTTCAAGCTTCAACCACCGTTATGAACGAAACGAAGAAAAAGATGAAGAAGAAGAAGAAGCGGCCTCGGGATTCTGAATCACAGAGCCAATCAGCTGAACCTCAACAAGAAGAGGGCACAGAATCCATGGAAAACAATGCGAACAGCAAGAAGAAGAAGAATAAGAAGTTGAAGATAGTAGAAGAAGAAGAAGAAAGCGAGGTTGACAAAAACGGTGAAGAAGAAGAAGAAGAAGAGAGGGAAGAAAAGAAGAAGAAGAAGAAGGGTGGTGGAATAATGAGTAACGATGAATTCTCTTCTCTAGGGTTATCAGAACCGACTTCGAAGGCAATTGGGGATATGGGGTTCAAATACATGACTCAGATTCAATCGAGGGCAATTCCTCATCTTCTAATTGGAAAAGATGTTCTTGGTGCTGCCAGAACCGGTTCTGGAAAAACCCTTGCTTTTTTAGTCCCTGCTGTGGAGCTTCTCTACAATGTTCAGTTCACACCTCGTAATGGTGCTGGTGTTATTGTCATTTGCCCCACCAGAGAGCTTGCAATTCAGACGCATGCTGTGGCAAAGGAACTGCTCAAGTATCATTCACAGACTCTTGGATTGATTATTGGAGGTTCGACGAGAAAACTCGAAGCTGAACGCATTGCTAAAGGGGTGAATCTGCTCGTCGCAACTCCTGGTCGCCTTCTTGATCATCTTCAGAATACAAAGGGGTTCATATATAAGAACTTGAAGTGCCTCATGATCGATGAAGCGGACAGGATACTAGAAGCTAACTTTGAGGAAGAAATGAAACAAATTATTAAGATCCTTCCAAAGAATAGGCAAACAGCTTTGTTTTCAGCTACGCAAACAAAGAAGGTTGAGGATCTTGCACGCTTGTCATTTCAGACAACTCCTATATATATTGATGTAGATGATGGGAGAACCAAGCAGACCCGCACAACTACCTTCTTTGACTTCTGCAAAGCAGAAACGGGGATCTTGCTCTGTACTGACGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCGAAGGAATATATCCACAGAGTTGGTAGAACAGCTCGCGGAGAAGGTGGAAAAGGAAATGCGTTGCTGTTCCTGATTCCTGAAGAATTACAATTTCTTCGATATCTGAAGGCAGCTAAGGTCCCTGTGAAAGAGTATGGATATGATGAAAAGAAGGTGGCAAACGTACAATCTCACCTGGAGGATTTGGTAGCCAACAACTTTTTTTTAAACAAGATGGCTAAAGATGCGTATAGATCGTATCTATTGGCATACAATTCGCATTCTATGAAGGATATATTCAATGTACACCGCCTCGATATGAAGGATGTAGCGGCTTCTTTCTGTCTCTCAAAACCACCAAATGTTACTCTGAACTTAAACAGCAGTAAGCAAAGGAATAAAATGCGCAAAGTTGATGGAAGAAGTCACAGCAACCCTCATGGAAAAAGAAATTTTCATTCTAAAAAGCAATTTGTGAGGCATTAG 1563 0.4216 MAESPESDEKFQASTTVMNETKKKMKKKKKRPRDSESQSQSAEPQQEEGTESMENNANSKKKKNKKLKIVEEEEESEVDKNGEEEEEEEREEKKKKKKGGGIMSNDEFSSLGLSEPTSKAIGDMGFKYMTQIQSRAIPHLLIGKDVLGAARTGSGKTLAFLVPAVELLYNVQFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLIIGGSTRKLEAERIAKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKQTRTTTFFDFCKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYGYDEKKVANVQSHLEDLVANNFFLNKMAKDAYRSYLLAYNSHSMKDIFNVHRLDMKDVAASFCLSKPPNVTLNLNSSKQRNKMRKVDGRSHSNPHGKRNFHSKKQFVRH 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211467g00026 520 MobiDBLite consensus disorder prediction 87 102 - -
Stsc211467g00026 520 MobiDBLite consensus disorder prediction 484 520 - -
Stsc211467g00026 520 SMART DUF4217_3 420 483 IPR025313 -
Stsc211467g00026 520 Pfam Domain of unknown function (DUF4217) 421 481 IPR025313 -
Stsc211467g00026 520 Coils Coil 53 91 - -
Stsc211467g00026 520 MobiDBLite consensus disorder prediction 491 505 - -
Stsc211467g00026 520 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 273 429 IPR001650 -
Stsc211467g00026 520 MobiDBLite consensus disorder prediction 54 75 - -
Stsc211467g00026 520 SMART helicmild6 272 380 IPR001650 -
Stsc211467g00026 520 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 312 IPR014001 -
Stsc211467g00026 520 MobiDBLite consensus disorder prediction 1 115 - -
Stsc211467g00026 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 444 IPR027417 -
Stsc211467g00026 520 MobiDBLite consensus disorder prediction 506 520 - -
Stsc211467g00026 520 Gene3D - 49 316 IPR027417 -
Stsc211467g00026 520 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 106 134 IPR014014 GO:0003724
Stsc211467g00026 520 SMART ultradead3 125 323 IPR014001 -
Stsc211467g00026 520 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 258 266 IPR000629 -
Stsc211467g00026 520 Pfam DEAD/DEAH box helicase 130 301 IPR011545 GO:0003676|GO:0005524
Stsc211467g00026 520 PANTHER RNA HELICASE 57 315 - -
Stsc211467g00026 520 MobiDBLite consensus disorder prediction 38 53 - -
Stsc211467g00026 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 314 IPR027417 -
Stsc211467g00026 520 CDD DEADc_DDX18 117 314 IPR044773 GO:0003724|GO:0005524
Stsc211467g00026 520 CDD SF2_C_DEAD 318 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211467g00026 Stsc-Chr211467 188893 192457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211467g00026 321 390 Eukaryotic Initiation Factors Gene Family AT3G13920 35.714 9.53e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211467g00026 K13179 - qsa:O6P43_022985 622.083