Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211467g00013 ATGACGTGGCGGAGGCTGTTAGAGCCTGTAGCTGCACACTCCTCCCTTCTCTGCTTCACTGCTTTGCTTCTTCTCAAGCTTCATCACCGCCTCTTCTTATCTTGGTGGATAATATTTTTTCCTCTCTGGATCTTTCATGCCATTGTGGCTCGAGGGAGGTTTCCATTGCCAGGGTTGTCAGCCCAACACAATCAAACTTGGGCAACAGGTTGTGCTGTCGTTGCAATGCCATTACTTACTGCGTTTGAACTGCTCCTTTGTATATATCTTGAGAGTATATGCGTTCGTGGTGCTCAAACAGTCAATATGAAGATCATGTTCCTTCCCTTACTGATGTTTGAAATCATTATTCTCATGGATAATTTCAGATTATGTAGGGTTCTAATGCCAGGGGATGAAGAAAACATGAGTGCTGAGCACTTTTCAGTTGCAATCTCTAGGGTCTTCTTCATTACTGCTACAATTTTCACACTCTTAAAACTGAGTGGTGATGTACGTGTTCTCAGCTGGTGGGATTTATTAATTAACCTCGCCATAGTTGAGTGCTTTGCTTTTGTTGTATGTACAAAGTGGTCCAATCTGGTCACCAGTGGTTTAGTGGTTTCTTCGGAGGGAAATCGACGCCTGAAGAGAATGTGTAGCATGCAAGACATAATCATGGAAGTACCAGTTATAGCATTCCAAATTCTAATTTGTAGGTATTTAGAGGGGGCACCCACTTGTGCTAAACAGAAACCTACACCAAGTTTTTTCTCTTTTCTTCTCCAGCTGCAAAGTGCTGGTGTGATGTTTGCTGCTTCTGACTTAGTGGAGAAACTTATACTACTACTAAATAGTGGAGCTGCTCGAAGAATATATTCTAGAGGTGTTTCTGGAGCTCATGATTGCTACGTGAGCCTCTTGCACCTCGGTTCTAGATTTTTAGGTTGGTTTCCAATTGCTGAAAGGAGTCAGGAAGAACAGGAAAATTTGGACTGTGAAGGATCTTCTGGGTATAATACATTCTCTGGCAACACACCTGTACCTGAGATCATTAAGAACATGCCTAAAAAGGATCTTGCCGAGGAGGTTTGGAGACTGCAGACAGCTCTTGGTGAGCAGGCTGAAATTACAAAATGCCGGGAGCGGGAGTACGAAAGACTTAAAAATGAGAAAATATTATGCAGAATTTGTTTTCAGAGAGAGATTAGCATTGTACTACTTCCATGTAGGCATCGCAGCCTTTGCAGCACATGCGCGGCGAAATGCAAGAACTGCCCAATCTGCCGCGACGATATTATAATGCGATTACCCGTCTATGATGCTTAG 1308 0.4312 MTWRRLLEPVAAHSSLLCFTALLLLKLHHRLFLSWWIIFFPLWIFHAIVARGRFPLPGLSAQHNQTWATGCAVVAMPLLTAFELLLCIYLESICVRGAQTVNMKIMFLPLLMFEIIILMDNFRLCRVLMPGDEENMSAEHFSVAISRVFFITATIFTLLKLSGDVRVLSWWDLLINLAIVECFAFVVCTKWSNLVTSGLVVSSEGNRRLKRMCSMQDIIMEVPVIAFQILICRYLEGAPTCAKQKPTPSFFSFLLQLQSAGVMFAASDLVEKLILLLNSGAARRIYSRGVSGAHDCYVSLLHLGSRFLGWFPIAERSQEEQENLDCEGSSGYNTFSGNTPVPEIIKNMPKKDLAEEVWRLQTALGEQAEITKCREREYERLKNEKILCRICFQREISIVLLPCRHRSLCSTCAAKCKNCPICRDDIIMRLPVYDA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211467g00013 435 ProSiteProfiles Zinc finger RING-type profile. 388 423 IPR001841 -
Stsc211467g00013 435 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 434 - -
Stsc211467g00013 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 433 IPR013083 -
Stsc211467g00013 435 Pfam Transmembrane Fragile-X-F protein 25 252 IPR019396 -
Stsc211467g00013 435 SMART ring_2 388 422 IPR001841 -
Stsc211467g00013 435 Pfam Zinc finger, C3HC4 type (RING finger) 386 426 - -
Stsc211467g00013 435 SUPERFAMILY RING/U-box 380 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211467g00013 Stsc-Chr211467 85862 91349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211467g00013 3 434 C3H Transcription Factor Family AT1G73950 56.306 3.15e-168 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211467g00013 - - ahf:112738273 780.015