Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211467g00009 ATGTCATCATCAAGTGGAACCATTTGGAGCTATGAAGAAGAGAAAGCATTTGAGAATGCCATAGCCATGCATTGGATTGAAGATGACTCAAAAGAGCAATGGGAGAAGATTGCTTCAGAGGTTCCAAGCAAAACCATAGAAGAATTGAAGCAACATTACCAGTTACTAGTAGAAGATGTAACTGCAATAGAAGCTGGTCAAATACCATTCCCAAATTACACTTCAGAAGAAACTACTTCTTCAAGTAAAGATCTCCATGGATCTTCCAAGTCTTCAAATTCTGATAAGAGATCAAATTGTAACTATGGAAGTGGATTCTCTGGCTTGGGACATGATTCCTCAACCACTCATACTGGTAAAGGATCCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAGGAACACAGGCTATTCTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCAAGAACTCCAACACAAGTAGCAAGTCATGCTCAGAAGTACTTCATAAGATTGAACTCAATGAATAGAGATAGAAGAAGGTCTAGTATCCATGACATTACAAGTGTTAACAATGGAGATGTGGCCAATAATCAAGCACCAATTACAGGACAGCATGGAAGCACAGCAATCCCTACAAGCACAATGGCTATGGGACAATCAATGAAGCATAGAGCACAACCACACCATCATCATCATCCTCATCATATACCTGCTGGTTTAGGCATGTATGGTGCACCAGTTGGGCACCCTGTGGCTGCTCCTCCTCATGGCCATATGGCATCTGCAGTTGGAACTCCTGTCATGCTTCCGCCCGGACCGCACCCTCATCCGCATCCGCATCCTCATCATCCACCTTATGTTGTTCCTCTTGCTTATCCAATGGCACCTCCAACAATGCATCAATGA 945 0.4254 MSSSSGTIWSYEEEKAFENAIAMHWIEDDSKEQWEKIASEVPSKTIEELKQHYQLLVEDVTAIEAGQIPFPNYTSEETTSSSKDLHGSSKSSNSDKRSNCNYGSGFSGLGHDSSTTHTGKGSLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHGSTAIPTSTMAMGQSMKHRAQPHHHHHPHHIPAGLGMYGAPVGHPVAAPPHGHMASAVGTPVMLPPGPHPHPHPHPHHPPYVVPLAYPMAPPTMHQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211467g00009 314 CDD SANT 9 57 IPR001005 -
Stsc211467g00009 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Stsc211467g00009 314 SUPERFAMILY Homeodomain-like 9 63 IPR009057 -
Stsc211467g00009 314 MobiDBLite consensus disorder prediction 71 135 - -
Stsc211467g00009 314 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Stsc211467g00009 314 Pfam Myb-like DNA-binding domain 9 55 IPR001005 -
Stsc211467g00009 314 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Stsc211467g00009 314 MobiDBLite consensus disorder prediction 71 123 - -
Stsc211467g00009 314 Gene3D - 135 187 - -
Stsc211467g00009 314 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Stsc211467g00009 314 Gene3D - 1 70 - -
Stsc211467g00009 314 FunFam Transcription factor SRM1 1 70 - -
Stsc211467g00009 314 SMART sant 133 183 IPR001005 -
Stsc211467g00009 314 SMART sant 5 59 IPR001005 -
Stsc211467g00009 314 FunFam transcription factor MYB1R1 135 186 - -
Stsc211467g00009 314 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Stsc211467g00009 314 PANTHER TRANSCRIPTION FACTOR KUA1 5 305 - -
Stsc211467g00009 314 SUPERFAMILY Homeodomain-like 131 186 IPR009057 -
Stsc211467g00009 314 CDD SANT 136 181 IPR001005 -
Stsc211467g00009 314 MobiDBLite consensus disorder prediction 262 295 - -
Stsc211467g00009 314 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 183 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211467g00009 Stsc-Chr211467 61555 62611 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211467g00009 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211467g00009 - - gmx:778049 466.848