LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211466g00040	ATGGAACAGCAAGCATATGGTGATTCTGATTCATCAACAACAAAATCTACTCATTTGGCTTCCAATAGTGAAGCTAAAACTCACTCCTCCAAAGAAGTCTCTGCACAAACTGCTACTGCTCATGATTCACCATCCGTGTTGCCTGTTTCTGGAATATCGTCCTGGGCAAAGAATCTGAAGCTCCGACACTCGTTTTCGCAGCAGGGGGAAAACAATGGGGAATCGGCCTTTGCTCGCCTCACTAGTAATCTAAGTCTAAAACTGCGACCGCCGTCGACAAATGAGGCTGCTCCTGATAGTAATTCAGGCAGTGAGCAGCCCAATTTAATTGAATCATTCACCAAAGGTTTGATGGACTCTTCCAAGAGTGCAGTTAAGGCAGTGCAAGTCAAAGCACGCCATATAGTCTCTCAAAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGATATGTCATACATCACTGAAAATATAATTGCTATGGGATTTCCAGGTGGTGATATTAGCTCTGGAATTTTCGGATACATTGAGGGATTCTATCGGAATCACATGGAAGAAGTAATCAAATTCTTTGAAACTCACCATAAGGGAAAGTATAAAGTATACAATCTTTGTGCAGAGAGGTTATATGATGGATCGCTATTTCAGGGGAAGGTTGCAACTTTCCCGTTTACTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTGAAAGTGCACATTCATGGTTGAAGGAGGATATTCAAAATGTAGTAGTTGTTCATTGTAAAGCTGGTATGGGGAGGACAGGATTAATGATTTGTAGTCTTCTTTTATTTCTGAAGTTCTTCCCAACTGCAGAGGAAGCCATAGATTACTTCAACCAGAAAAGATGTATAGATGGAAAGGGCTTAACTCTTCCTAGTCAAATAAGATATGTCAAATATTTTGAACGGACTTTAAAACAATTCAACGGCGAAGTGCCCCCTGGACGAAGGTGCATGCTAAGAGGGTTTCGGCTTCATAATTGCCCTTACTGGGTTAGGCCATCAATTACAATATCTGGTCATAGTGGAATTCTATTCAGCACGAAAAAGCATCCAAAGACAAAGGATTTAATGCCCGAAAGTTTCTGGATCAGTGGACGGAAAAAAGGAGTAGTAGTATTTGCAATACCTGGGGAGCCTGGTTTGACAGAGTTGGTTGGGGACTTCAAAATTCACTTTAATGATGGGCAGGGTGATTTCTACTGTTGGATGAATACAACAATGACAGAAAATCGAACCATTTTAGGTGGATCAGATCTTGATGGCTTTGACAAGAGAAAGATCCCCACTCCAGGATTCCAGGTCGAAGTTGTGATGGTCGACTATGATGGCACCGTACCAGCAAGAAACAAAGCTGGTCCTGCCAGCACAGAATCCGAAGGAAGCACCAACAAGTACCAAGATGGTGCAAAACTTCCATCTAAGAGTAAGGTCCCTGAGAATGGAGATGATGATGATGTATTTTCAGATAGTGACGAAGAGAAGGATACACAGAGCGGAAAATCTGCACCTGAATATAAGTTAGCTGCACCTCAAGCATCTGGGGATACTGCAGACCATGAAGGAGTGTTGACACATTCAACGAATCAGTTGTCACTCCAACATGAGGAACGTAAGCAAAACAATGCTTCCCAAGAATCAACAACAGATAATAAAATTCAGGAATCTCGTAACAGCACCAACATAGAGTCTGCAGGGGCAAGTGAAATCAAGGCAATTGCAGCTGATGCTTCGGTTTTTTCTTTTGGAGATGAAGATTTTGAAAGCGATTGA	1809	0.4168	MEQQAYGDSDSSTTKSTHLASNSEAKTHSSKEVSAQTATAHDSPSVLPVSGISSWAKNLKLRHSFSQQGENNGESAFARLTSNLSLKLRPPSTNEAAPDSNSGSEQPNLIESFTKGLMDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMSYITENIIAMGFPGGDISSGIFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCAERLYDGSLFQGKVATFPFTDHNCPPIQLIASFCESAHSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNQKRCIDGKGLTLPSQIRYVKYFERTLKQFNGEVPPGRRCMLRGFRLHNCPYWVRPSITISGHSGILFSTKKHPKTKDLMPESFWISGRKKGVVVFAIPGEPGLTELVGDFKIHFNDGQGDFYCWMNTTMTENRTILGGSDLDGFDKRKIPTPGFQVEVVMVDYDGTVPARNKAGPASTESEGSTNKYQDGAKLPSKSKVPENGDDDDVFSDSDEEKDTQSGKSAPEYKLAAPQASGDTADHEGVLTHSTNQLSLQHEERKQNNASQESTTDNKIQESRNSTNIESAGASEIKAIAADASVFSFGDEDFESD	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211466g00040	602	ProSiteProfiles	C2 tensin-type domain profile.	327	454	IPR014020	-
	Stsc211466g00040	602	CDD	PTP_PTEN	151	315	IPR045101	GO:0016791
	Stsc211466g00040	602	MobiDBLite	consensus disorder prediction	88	108	-	-
	Stsc211466g00040	602	PANTHER	PHOSPHATASE WITH HOMOLOGY TO TENSIN	119	578	-	-
	Stsc211466g00040	602	MobiDBLite	consensus disorder prediction	467	482	-	-
	Stsc211466g00040	602	MobiDBLite	consensus disorder prediction	461	576	-	-
	Stsc211466g00040	602	MobiDBLite	consensus disorder prediction	1	48	-	-
	Stsc211466g00040	602	ProSiteProfiles	Phosphatase tensin-type domain profile.	141	320	IPR029023	-
	Stsc211466g00040	602	SMART	PTEN_C2_2	325	453	IPR014020	-
	Stsc211466g00040	602	FunFam	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2	126	323	-	-
	Stsc211466g00040	602	Pfam	Protein-tyrosine phosphatase	227	279	IPR000242	GO:0004725\|GO:0006470
	Stsc211466g00040	602	Gene3D	Protein tyrosine phosphatase superfamily	126	323	IPR029021	-
	Stsc211466g00040	602	ProSitePatterns	Tyrosine specific protein phosphatases active site.	257	267	IPR016130	GO:0016311\|GO:0016791
	Stsc211466g00040	602	MobiDBLite	consensus disorder prediction	533	576	-	-
	Stsc211466g00040	602	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	147	317	IPR029021	-
	Stsc211466g00040	602	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	255	294	IPR000387	GO:0016311\|GO:0016791

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211466g00040	Stsc-Chr211466	252806	257220	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211466g00040	34	602	Protein tyrosine phosphatase (PTP) family	AT3G19420	61.329	0.0	728

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211466g00040	K01110		-	gmx:100801622	871.307