Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211466g00034 ATGGAAACTCTTCTGTACCATAAACTTCATGCATCTGTTTCTGCAGTCCTGTTTTTACTTCTTCTTCAGTTCCATTCACTGGCCTACACACTCCCAGATGAGTTCTTCATCAATTGTGGCTCAGATACCAATGTCACAGACAGAAATAGTGGTCGAATTTTCATTGGAGAAAGAGAAGGAGAAATGGAATCATCTTCTGTTCTTCCTTTCATCTTCCCAAAACATGGTACCAGCAAAGAGAAAGAGAACAACAATTCACCAACACCAACACCAACACCTCCTCTGTATCAAACTGCAAGGCTTTTCCATGCTGAATCTGAATACAATTTCAGAATTGAAAACCATGGATATCATCTTCTTCGCCTTCATTTCTTTGCTTTCTCTTCTTCCAAAGGTAATAACCTCTCCTCTGCTCACTTCAATGTCTCTGTTCCTGGGTTCTGCCTTTTGAACAATTTCACTCCACAAAACATGAACAAACCCATAATAGAGGAATTCTTTTTGATCATCAACACCGACAACTTTCAAATCACTTTCTCACCAATCCTTCCAAATCTTGCATTTATAAATGCCATAGAACTCTTCCTTCTCCCCATAAATTCTCCACATAAATATGCTTATCTGAATGGCCTGGAACTAATGAAAATCATTGAGAAAAACACAAGTTCAGGTCCTATGGTAAAAGAAGAACAGAGTCATCATCATTCTCATTCTCATTGGCATTGCCCTTGGCATATGTGTGTGCATTTGAAACTGTTGGCAATTCTTGGAGCTGTGGCTTTGGTTTCAGTTATAGCAGTTGTGTTCCTTGTGTGTCTGAAACTCATCAAGAAGCCGAAGCATGATGAAAGTGTTGATTGGTTGCCAATGGAGAAAAAAGAAGGAAGAAGCTCACACTCTCATAGCAGATATGGTAGCAGCCATGGCTCATCATCATCATCATCATATTCACATGTACCAAACTTAAACAAGATCCGTTTTGAAGAACTCCAAGTTGCTACCAACAACTTCGACCAGAATTGGGTAATTGGAAAGGGTTGTTTTGGAACTGTATACAAAGGTCTTCTCAACAATGGACTTAGGGTGGCAGTGAAAAGACTACAACAACAAGAACAAGGCCTCTTGGATATGGAAGAGGAGATCAAGATTCTGTTGAGAATTCGCCATCGACACCTCGTTTCGTTGATGGGGTATTGCTATGAGAGATCAGAGATGATTCTTGTTTATGAGTTCATGGAGAAAGGGACACTGAGGGATCATATAAAGAATTCCAGCTTGTGTTGGATTCAGAGGCTTGAGATTTGCATTGGAGCTGCAAGAGGATTGAATTACCTTCACAATGGGTCTTCTTGCAGAGGAATCAACAATGTTCATAGCCATGTCAAGTCTAGTAACATATTATTAGATGAGAATAATGTGGCTAAGATATCAGGCTTTGGGCTTTCAAGAAAAGGTGCTTTTCATGATGAGAAGATGAAGTGTGATGATGTGTATTCTTTTGGTGTGGTACTTGTTGAGGTGGTGTGTGGAAGGGTGGGTAATAACTTGGGTGGTGAATGGGGAAGCATTTGGAAGAAGAAAGGGAGATTGGAAGAAATTGTGGATCCTTGCATAAAGTGTGAGATAGATGGAAAGTCTCTGAGAAAGTTTGGTGAGACTATAGACAAGTGTTTGAGAAACAGGCCTTGTATGGGTGATGTGTTGTGGGATTTGGAGTATGCTTTGCAACTTCAGAGAGGGGCAATTCAGACAAAAACAACACACACACATGGTACTTCTTCTGCTACTATTGAAAAACCTACTACTCAAGAAATGGCCATTCTGAAGCATGATCAATTGAATAGTAGTGCACTGAACTATTATTCTGTTTTGTAA 1875 0.3989 METLLYHKLHASVSAVLFLLLLQFHSLAYTLPDEFFINCGSDTNVTDRNSGRIFIGEREGEMESSSVLPFIFPKHGTSKEKENNNSPTPTPTPPLYQTARLFHAESEYNFRIENHGYHLLRLHFFAFSSSKGNNLSSAHFNVSVPGFCLLNNFTPQNMNKPIIEEFFLIINTDNFQITFSPILPNLAFINAIELFLLPINSPHKYAYLNGLELMKIIEKNTSSGPMVKEEQSHHHSHSHWHCPWHMCVHLKLLAILGAVALVSVIAVVFLVCLKLIKKPKHDESVDWLPMEKKEGRSSHSHSRYGSSHGSSSSSSYSHVPNLNKIRFEELQVATNNFDQNWVIGKGCFGTVYKGLLNNGLRVAVKRLQQQEQGLLDMEEEIKILLRIRHRHLVSLMGYCYERSEMILVYEFMEKGTLRDHIKNSSLCWIQRLEICIGAARGLNYLHNGSSCRGINNVHSHVKSSNILLDENNVAKISGFGLSRKGAFHDEKMKCDDVYSFGVVLVEVVCGRVGNNLGGEWGSIWKKKGRLEEIVDPCIKCEIDGKSLRKFGETIDKCLRNRPCMGDVLWDLEYALQLQRGAIQTKTTHTHGTSSATIEKPTTQEMAILKHDQLNSSALNYYSVL 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211466g00034 624 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Stsc211466g00034 624 PANTHER OS07G0166700 PROTEIN 322 578 IPR045272 GO:0004714|GO:0006468
Stsc211466g00034 624 MobiDBLite consensus disorder prediction 287 318 - -
Stsc211466g00034 624 Gene3D - 34 196 - -
Stsc211466g00034 624 FunFam receptor-like protein kinase FERONIA 298 411 - -
Stsc211466g00034 624 Pfam Malectin-like domain 75 199 IPR024788 -
Stsc211466g00034 624 Pfam Protein tyrosine and serine/threonine kinase 342 486 IPR001245 GO:0004672|GO:0006468
Stsc211466g00034 624 Gene3D Transferase(Phosphotransferase) domain 1 412 492 - -
Stsc211466g00034 624 Gene3D Transferase(Phosphotransferase) domain 1 493 596 - -
Stsc211466g00034 624 Coils Coil 360 387 - -
Stsc211466g00034 624 Gene3D Phosphorylase Kinase; domain 1 298 411 - -
Stsc211466g00034 624 SUPERFAMILY Protein kinase-like (PK-like) 310 572 IPR011009 -
Stsc211466g00034 624 MobiDBLite consensus disorder prediction 287 301 - -
Stsc211466g00034 624 ProSiteProfiles Protein kinase domain profile. 337 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211466g00034 624 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211466g00034 Stsc-Chr211466 199664 201672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211466g00034 199 583 Receptor kinase-like Gene Family AT3G46290 41.822 8.74e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc211466g00034 PK_Tyr_Ser-Thr 6.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211466g00034 - - aip:107642740 604.749