Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211466g00014 ATGGTCTATCTCTTCGGGTACAGATTCCATCACAGGAGCCCAATTTCTTTGGTATCGGTAACACAAAACGGCGCCACTGCAACGCCCTACGACGTCGTATTTCTTAGTCGTTGTTGCAGATACCACCGCTTCAGTAGCGCATCTGAATCTTCTTGGGAAGAATTCCCCGTGGAGAACGCGTATGAGCTGCTAGGAGTGTTGGAGACCAGCTCCTTCGCTGAGATCAAAGCGTCGTTTCACAAATTAGCGAAAGAGACTCACCCGGACCTTGCTGAGTCAAGGAACGATTCCGCTGAGTCTCGCCGATTCGTGCAAATCCTGGCTGCATACGAGATTCTTTCAGATTCTCGGAAGAGAGCCCATTATGACATGTATTTATTGTCCCAGAGAAGGCTTATGCAGAGGCATTCCCAACAGGGTTCAAAATTGCACATTTACGAATCCCATTCTAATACATTCAAGGAGATGGAAGTTGTTGAATGGTTGAAATGGTACAGATTAACTATAAATGATATTTTGTCAGAGAAGAAGGTGGTGGATGGTACAGGCTACTTTGATGTGCTTGAGAGAGATTTCTATTCAGCTATTCATGCAGCATATTATGGTCCTGAAATTGATTCTATGCCTATGGAGCTTTTTCCTGAGTGCTTTGAGGCCGAGGAAAGGTCCTCTCAAGAAACTTCTGAGGTTTTGCACTTGGTTTCCGGCCGTGATCTTTTCGGGATGGTTTGCCTAGTTGACAAGATTCCAGAGATATCATCTACTAAAAATGAAAAGTTAATTTCTTTCAGATCCTTCCATTCTGGCCTGTGCCAATCTACAACGAAGAAGGAATTTCACATCAATGAAGAAAGGCAAGAGGACTTTGGAACTCATCAAACTCACACCTCTAACATTTCAAATAGTGTATCGGATGCATATAGAGATCTAGAATTGCATGTCTCCGGCAGAGTGATTGCTACAGCATCGAGGGACCTACCTAGATGTTATTCTGATGAAGGTTGTTGTTATGTCTACAACAGCAATGGTGACAGGACCCATGCAATCATGAAACATAGAACATTGCTGGTGAAACATTTGCACTGGTACGAAGTGGGTGACAAAGTTTCTCTCTGTGAGTGTAGATGCACTAGAGCACGTTTACCACCAAGCAAGTTTTGGCTATTTGAACCTCGCTGTGGCTTCCATGACATAGGGGGTTGGTATGTTGAAACATATGGAAAAGATAAGAAGGGTCATACGGTACCATCACAAAGGTTGTGGGATGGCTTGGACAATAGCGAGCAAGCTGACAGAAGACTTCATCCAGCTATGTATCTATTTGCTCTTGCATATCGTACACTCGATATTGAATATGCCAAAGCAAACAAGAAGACCTTCAGGCATGTTGTTGGAGCACAAATGTTCAGAATTCTTCATTGGTGTAGGAAACTTGTTTAA 1440 0.434 MVYLFGYRFHHRSPISLVSVTQNGATATPYDVVFLSRCCRYHRFSSASESSWEEFPVENAYELLGVLETSSFAEIKASFHKLAKETHPDLAESRNDSAESRRFVQILAAYEILSDSRKRAHYDMYLLSQRRLMQRHSQQGSKLHIYESHSNTFKEMEVVEWLKWYRLTINDILSEKKVVDGTGYFDVLERDFYSAIHAAYYGPEIDSMPMELFPECFEAEERSSQETSEVLHLVSGRDLFGMVCLVDKIPEISSTKNEKLISFRSFHSGLCQSTTKKEFHINEERQEDFGTHQTHTSNISNSVSDAYRDLELHVSGRVIATASRDLPRCYSDEGCCYVYNSNGDRTHAIMKHRTLLVKHLHWYEVGDKVSLCECRCTRARLPPSKFWLFEPRCGFHDIGGWYVETYGKDKKGHTVPSQRLWDGLDNSEQADRRLHPAMYLFALAYRTLDIEYAKANKKTFRHVVGAQMFRILHWCRKLV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211466g00014 479 ProSiteProfiles dnaJ domain profile. 59 126 IPR001623 -
Stsc211466g00014 479 Pfam DnaJ domain 59 123 IPR001623 -
Stsc211466g00014 479 Gene3D DnaJ domain 50 147 IPR036869 -
Stsc211466g00014 479 PRINTS DnaJ domain signature 98 118 IPR001623 -
Stsc211466g00014 479 PRINTS DnaJ domain signature 61 79 IPR001623 -
Stsc211466g00014 479 PRINTS DnaJ domain signature 79 94 IPR001623 -
Stsc211466g00014 479 ProSitePatterns Nt-dnaJ domain signature. 103 122 IPR018253 -
Stsc211466g00014 479 SMART dnaj_3 58 118 IPR001623 -
Stsc211466g00014 479 CDD DnaJ 59 115 IPR001623 -
Stsc211466g00014 479 SUPERFAMILY Chaperone J-domain 58 132 IPR036869 -
Stsc211466g00014 479 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 30 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211466g00014 Stsc-Chr211466 61974 65384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211466g00014 61 123 C2H2 Transcription Factor Family AT1G74250 39.394 7.34e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211466g00014 - - qsa:O6P43_033886 625.55