Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211466g00007 ATGCACAGAGATGTCAAGCCTCATAATGTCATGATAGATCATGAATTAAGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGCGTGGCTTCAAGATACTTCAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTATTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGGAAGGAACCTTTCTTCTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCGTATCTGAATAAGTATCATCTTGAGCTTGATCCCCAACTTGATGCTCTTGTTGGAAGACACAGTCGTAAACCATGGTCGAAGTTTATCAATTCAGATAATCAGCATCTCGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGGTATGATCACCAAGACAGGCTAACAGCTAGAGAAGCAATGGCACATCCGTATTTCTCTCAAGTTAGGGCTGCTGAAAGTAGCAGAATGAGGACACAGTAA 561 0.4135 MHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211466g00007 186 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 182 IPR045216 GO:0004674|GO:0006468
Stsc211466g00007 186 SMART serkin_6 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211466g00007 186 CDD STKc_CK2_alpha 1 172 IPR045216 GO:0004674|GO:0006468
Stsc211466g00007 186 Gene3D Transferase(Phosphotransferase) domain 1 1 172 - -
Stsc211466g00007 186 ProSiteProfiles Protein kinase domain profile. 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211466g00007 186 Pfam Protein kinase domain 1 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211466g00007 186 FunFam Casein kinase II subunit alpha 1 175 - -
Stsc211466g00007 186 SUPERFAMILY Protein kinase-like (PK-like) 1 176 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211466g00007 Stsc-Chr211466 27807 30355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211466g00007 1 172 Core Cell Cycle Gene Families AT2G38620 33.526 1.54e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Stsc211466g00007 Pkinase 3.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211466g00007 K03097 - pop:18101134 389.808