Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211466g00006 ATGTCGAAGGCGCGTGTCTACACTGATATCAATGTTCTTCGCCCCAAAGAGTACTGGGATTACGAATCTCTCAACGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTGGGAAGGGGGAAATATAGTGAGGTTTTTGAAGGAATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTGAAGAAAAAAAAGATTAAAAGGGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCTAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACATTCAAAAACTCCTAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAACTCCTTAAGGCATTGGATTACTGCCACTCTCAAGGCATAATGCACAGAGATGTCAAGCCTCATAATGTCATGATAGATCATGAATTAAGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGCGTGGCTTCAAGATACTTCAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTATTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGGAAGGAACCTTTCTTCTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCGTATCTGAATAAGTATCATCTTGAGCTTGATCCCCAACTTGATGCTCTTGTTGGAAGACACAGTCGTAAACCATGGTCGAAGTTTATCAATTCAGATAATCAGCATCTCGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGGTATGATCACCAAGACAGGCTAACAGCTAGAGAAGCAATGGCACATCCGTATTTCTCTCAAGTTAGGGCTGCTGAAAGTAGCAGAATGAGGACACAGTAA 1002 0.3982 MSKARVYTDINVLRPKEYWDYESLNVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINSDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211466g00006 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Stsc211466g00006 333 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Stsc211466g00006 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 329 IPR045216 GO:0004674|GO:0006468
Stsc211466g00006 333 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211466g00006 333 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Stsc211466g00006 333 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Stsc211466g00006 333 FunFam Casein kinase II subunit alpha 20 110 - -
Stsc211466g00006 333 SUPERFAMILY Protein kinase-like (PK-like) 9 323 IPR011009 -
Stsc211466g00006 333 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Stsc211466g00006 333 FunFam Casein kinase II subunit alpha 111 322 - -
Stsc211466g00006 333 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211466g00006 333 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211466g00006 Stsc-Chr211466 26142 30355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211466g00006 32 319 Core Cell Cycle Gene Families AT1G76540 29.773 6.15e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Stsc211466g00006 Pkinase 6.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211466g00006 K03097 - pop:18101134 664.07