Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211466g00001 ATGTCTAATTCAAACCCACAACAAGTTGGTTCGTTTCCCAACACACACTACTACGGTACTATTAGTCGGAACCAACAACAAATTCCAAGAACAAGGCAATGGCCTGCCTTCCCTACACCTAAGTCCCTACCTACTTCAACCACCTTCGGTGACGCCACTTGCATGGAACAGTTACTTGTTCACTGCGCCAACGCCATTGAAACCAACGACGTAACCCTCGCTCAGCAGATTCTCTGGGTCCTCAACAACATAGCTCCCCCTGACGGAGATTCTAACCAGCGGCTCGCCGGAAGCTTCCTCAGAGCCCTGACATCACGCGCCGCTAACACAGGTAGCTCCAAGATGCTGGCCGCCGTCGCTGACGCTGCTGCTAACCGAACCAGCCTCGCCACCGAAACACACAGATTCTCCGTCATCGAGCTGGCAAACTTCGTTGACCTCACTCCATGGCACCGGTTCGGTTTCACCGCCGCCAACGCCGCCATTTTAGAAGCCACGGAAGGGTTCTCGGTGATTCACATCGTGGATTTGAGCTTGACGCACTGCATGCAGATCCCGACGCTGATCGACGCCATCGCTGGCCGCCACGAGGTTCCACCCGTCATCAAGCTCACGGTTCCCGGCGCAGCCTCCAGAGAAGGTAACATCAATATCCCTCCATTACTCGATCTATCGTATGAGGAATTAGGCGCGAAGTTGGTCAACTTCGCTAGGTCGAAGAACGTGGTAATGGAATTCAGGGTTGTTTCTTCAAGCTACGCCGATGGATTCGCCTCTCTGATCGAACACCTTCGAATGCAACATATAGTTTACGCTGCTGAAGGTCATCATCCAAACGAAGCTTTGGTTATTAACTGCCACATGATGCTTCATTACATTCCCGATGAAACTGCACTAGATTCGAATCCAAACCCTTTCCTTGTCCATGATTACTCATCTTCTTCTTCGTCGTCTTCGTCGTTGCGGTCAATGTTTCTTAAGGCAGTTCGGAGTTTAGAACCAACGATAATGGTTTTGGTAGATGAGGATGCGGATTTGATATCAAATAACTTGGTGTGTAGGCTAAGATCTGCGTTCAATTATCTGTGGATACCGTACGACACGGTGGACACGTTTCTTCCGCGAGGGAGCAAGCAAAGGCAGTGGTATGAGGCTGACATATGTTGGAAGATTGAGAACGTGATAGCGCATGAAGGGGTTGAGAGAGTTGAGAGGGTTGAGCCAAAGAGCAAGTGGGAGCAAAGGATGAGGAATGCGAGCTTTCATGGGATTGGATTCAGTGATGAGTCGGTTTCGGAGGTGAAAGGGATGCTGGATGAACATGCTGCTGGTTGGGGTGTAAAGAAGGAAGATGACAATCTTATTCTCACTTGGAAAGGCCACAATGTTATCTTTGCCTCTGCTTGGTTACCTGCTTAG 1419 0.5004 MSNSNPQQVGSFPNTHYYGTISRNQQQIPRTRQWPAFPTPKSLPTSTTFGDATCMEQLLVHCANAIETNDVTLAQQILWVLNNIAPPDGDSNQRLAGSFLRALTSRAANTGSSKMLAAVADAAANRTSLATETHRFSVIELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDAIAGRHEVPPVIKLTVPGAASREGNINIPPLLDLSYEELGAKLVNFARSKNVVMEFRVVSSSYADGFASLIEHLRMQHIVYAAEGHHPNEALVINCHMMLHYIPDETALDSNPNPFLVHDYSSSSSSSSSLRSMFLKAVRSLEPTIMVLVDEDADLISNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGVERVERVEPKSKWEQRMRNASFHGIGFSDESVSEVKGMLDEHAAGWGVKKEDDNLILTWKGHNVIFASAWLPA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211466g00001 472 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 54 458 IPR005202 -
Stsc211466g00001 472 ProSiteProfiles GRAS family profile. 46 470 IPR005202 -
Stsc211466g00001 472 Pfam GRAS domain family 55 469 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211466g00001 Stsc-Chr211466 5764 7450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211466g00001 37 471 GRAS Transcription Factor Family AT3G49950 56.849 3.31e-173 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc211466g00001 GRAS 4.9e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211466g00001 - - adu:107487668 821.617