Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211465g00024 ATGTCCGCCGCCGCCGAAGCTCCTAAACGCCATGATTCGCCGCCGAGGGAAGCTTCCGGCATCCCGAACCGTCCGACGCCGAAGCGTCACCTAGCCTTCGCTTCGACCAAGCCGCCGTTTGCTCCGCTGGACGACTACCGCAGCTTTTCCGGTCCCCACTCTCGGAAAGCCTCCGATCAAGAACCGGAAGCTGTCGTCGTTCGATCTCCATACATGAAGCGCAAGAGTGAGGCACGGGAGCAAAGTACCAGTCTTGGATACACTAATGTAATTAATAGTCCTCTCCAAACCCCTGGATCTACAAAAGGAGGGAGAACATATAATAAGTCAAGGGCTTCCAAGGAAGGTAGATCTGGTCCACAAACACCCATCTTAGAGGCTGGATCCCCATCTCTTACTCCTAGCAGCTGCCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCGTCAATTTGCTCAAGCATGCAGAGGGTGGCAATCTTGACCTAAATAAAGCAGCGGAAACTTTGGAGGTGCAAAAGAGAAGGATATATGACATAACTAATGTTCTGGAAGGAATTGGTCTTATAGAGAAGAAGATCAAGAACAGAATACATTGGAAGGGGATTGATTGTTCTACATCTGGTGGGATAGATGGTGATGTATCTATGCTGAAGGAAGAAGTTGAGAAACTTTCCTCGGAGGAGCACAGATTGGATGATCAAATAAGGGAAATGCAAGAAAGACTGAGGATTTTAAGTGAAGATGAAAACAATAAGAAGATGCTTTACGTAACCGAAGATGATATCAAGGCCTTACCTGAATTCCAAAATGAAACTCTCATAGCAATCAAAGCTCCACATGGAACCACACTGGAAGTCCCTGAACCTGAGGAAGCTGTTGACTACCCACAGAGGAGATATAGGGTCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTTCCTTATCAGTCAATTTGAGGAGAAATTTGAAGAGATGAGCTTTCCACTTGCTTCAAGTTCTGGGTCCAACGAACATCAAGCAGCAGAACAGTTACCTGTTGAATGCAATGATAAAGGCCCTGAACCTCAAGCTCAACCTTCTTCTAATACCTGTTCTGATCTAAACACTGTACAAGAATTTGCTGGTGGCATGATGAAAATTGTTCCTTCAGCTGCTGACACTGATGCGGATTACTGGCTTCTATCAGATGTTGAAGCTAGCATAACAGACATGTGGAAAACAGATTCTAATGTAGATTGGGATGGTGTGGACATGCTTCATCCTGACTTTGGAATCATCTCGAGACCACAAACTCCATCATCTGGGTTTGCTGAAGCACCATCAGCAGTAGCCAGCATTCCTCACAGGTGA 1359 0.4592 MSAAAEAPKRHDSPPREASGIPNRPTPKRHLAFASTKPPFAPLDDYRSFSGPHSRKASDQEPEAVVVRSPYMKRKSEAREQSTSLGYTNVINSPLQTPGSTKGGRTYNKSRASKEGRSGPQTPILEAGSPSLTPSSCRYDSSLGLLTKKFVNLLKHAEGGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKIKNRIHWKGIDCSTSGGIDGDVSMLKEEVEKLSSEEHRLDDQIREMQERLRILSEDENNKKMLYVTEDDIKALPEFQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRVILRSTMGPIDVFLISQFEEKFEEMSFPLASSSGSNEHQAAEQLPVECNDKGPEPQAQPSSNTCSDLNTVQEFAGGMMKIVPSAADTDADYWLLSDVEASITDMWKTDSNVDWDGVDMLHPDFGIISRPQTPSSGFAEAPSAVASIPHR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211465g00024 452 MobiDBLite consensus disorder prediction 1 133 - -
Stsc211465g00024 452 Pfam E2F/DP family winged-helix DNA-binding domain 140 203 IPR003316 GO:0005667|GO:0006355
Stsc211465g00024 452 MobiDBLite consensus disorder prediction 49 80 - -
Stsc211465g00024 452 PANTHER TRANSCRIPTION FACTOR E2F 80 414 IPR015633 GO:0000978|GO:0006357
Stsc211465g00024 452 MobiDBLite consensus disorder prediction 81 117 - -
Stsc211465g00024 452 SUPERFAMILY E2F-DP heterodimerization region 216 320 IPR037241 -
Stsc211465g00024 452 Gene3D - 133 205 IPR036388 -
Stsc211465g00024 452 SMART E2F_TDP_2 138 203 IPR003316 GO:0005667|GO:0006355
Stsc211465g00024 452 Gene3D - 211 320 - -
Stsc211465g00024 452 CDD E2F_DD 219 320 IPR032198 GO:0046983
Stsc211465g00024 452 FunFam E2F transcription factor 1 133 205 - -
Stsc211465g00024 452 Pfam E2F transcription factor CC-MB domain 219 319 IPR032198 GO:0046983
Stsc211465g00024 452 Coils Coil 216 250 - -
Stsc211465g00024 452 MobiDBLite consensus disorder prediction 432 452 - -
Stsc211465g00024 452 SUPERFAMILY "Winged helix" DNA-binding domain 138 201 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211465g00024 Stsc-Chr211465 201117 206044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211465g00024 22 450 E2F-DP Transcription Factor Family AT2G36010 56.531 2.62e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc211465g00024 E2F_CC-MB 1.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211465g00024 K06620 - gmx:100811762 619.772