Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211464g00046 ATGGCGGGAATTAGAGTCAAGGAGGAAGAGGAGACGGTGGGCGGTTCATCTTCTTCGTCAAGCGTGTCACCGCAGCCCATGGAAGGGTTGCACGATGTGGGACCACCGCCGTTTCTGTGCAAGACGTTCGAAGTGGTGGAGGATCCTTCCACCGATCCCATTGTTTCTTGGAGCAGAGCGCGCAACAGCTTCGTTGTTTGGGACTCGCACAGATTCTCCACCACGATCTTGCCTCGTTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACTTACGGTTTTAGGAAAGTTGATCCTGATCGATGGGAGTTTGCGAACGAGGGATTCTTGGCGGGGCAGAAGCACTTGTTGAAGACGATAAAGAGGAGGAGGAATGTGACACAGTCTTCTTCATCGAGCATGATCCAGCATGGAGGAGGTGGAGGGAGCTGTGTTGAGTTGGGTGAGTATGGTTTGGAAGGTGAGATTGAGAGGCTGAGAAGGGATAGGACGGTGTTAATGGCGGAGATCGTGAAGCTGAGGCATCAACAGCACAACTCGAGGGAGGTGCTTTGTTCAATGGAGTCAAGGTTGCAAATCACAGAGAAGAAACAGACTCAGATGATGACCTTCCTCGCTAAAGCACTTAACAATCAGTCCTTCATTCATAACTTATCTAATCAGAACAGAGAATTGCAGGGTGTTGAGATCAGCAGGAAGAGGAGAATAACTGACACCGCAACTGTGGAGAATCTGCAAGAGGCTGCTCCTGTTGGTGTTGGAGAAGATCAAGAGGAATTAGCCAGTATTGGGTGTGAGATGGAGACATTCTTGTCAAGTGCTTGTGATAATGAATCCAGCAGTGAAATGAAGGAGCCTACTACCTCTGCTGCTGCTGCTACTGCTACTAATGAGAGTATCTGGGAGGATTTGCTGAGTGAGGATCTGGTTTGTGGGAATCCAGAGGATGAAGTTGTGATTGGTGATTACCAGCATCAACAACTTGAGGATTTGGCTGCAAACACTGGCTAG 1023 0.4917 MAGIRVKEEEETVGGSSSSSSVSPQPMEGLHDVGPPPFLCKTFEVVEDPSTDPIVSWSRARNSFVVWDSHRFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLKTIKRRRNVTQSSSSSMIQHGGGGGSCVELGEYGLEGEIERLRRDRTVLMAEIVKLRHQQHNSREVLCSMESRLQITEKKQTQMMTFLAKALNNQSFIHNLSNQNRELQGVEISRKRRITDTATVENLQEAAPVGVGEDQEELASIGCEMETFLSSACDNESSSEMKEPTTSAAAATATNESIWEDLLSEDLVCGNPEDEVVIGDYQHQQLEDLAANTG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211464g00046 340 Coils Coil 160 180 - -
Stsc211464g00046 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 24 276 IPR027725 -
Stsc211464g00046 340 Pfam HSF-type DNA-binding 38 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211464g00046 340 SMART hsfneu3 34 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211464g00046 340 ProSitePatterns HSF-type DNA-binding domain signature. 77 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211464g00046 340 SUPERFAMILY "Winged helix" DNA-binding domain 34 127 IPR036390 -
Stsc211464g00046 340 MobiDBLite consensus disorder prediction 1 28 - -
Stsc211464g00046 340 Gene3D - 31 128 IPR036388 -
Stsc211464g00046 340 PRINTS Heat shock factor (HSF) domain signature 38 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211464g00046 340 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211464g00046 340 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211464g00046 340 FunFam Heat shock transcription factor 1 31 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211464g00046 Stsc-Chr211464 266756 268948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211464g00046 24 340 HSF AT2G26150 52.294 6.82e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc211464g00046 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211464g00046 K09419 - gmx:100794605 397.512