Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211464g00042 ATGGGTTCCAATGCAAAAAGCAAAGGAAGGAATAGCGGGGCCAAACTCAAACACCAAACACTGTTTGTCCGTTTCACGTTTTTTGAATTTCAAAATCTAGTAACCTCCTCCCACCACACCACACACCACACTCTTCCTTTTCTGTTTTCTCTCTCCAACATCATAGCATTCATTCCAAGTGAAGTCGTAACTGAACTGAACCCCATTTCAATTACATCAACCACAATGGGTGCTTCCGGTAAATGGGTCAAAGCATTTATCGGCCTCAAGAAGCCCTCCGACAAAGACCAACTCAACCATAATCATGGCAACAAGAGTAACAAAAAATGGAGGCTATGGAGGACTTCCTCTGCGGACATGTCTTCATGGAAACCCTTCAAATCCACCACCACTCATAAACCAGCCTCCCAATGCTCCGACTCACCACCAGCATCTTCAAAAGCCTTCACGGCTGCCATGGCCGCCGTGGTTCGAGCTCCTCCCAAGGATTTCAAACTCGTCAGGCAAGAATGGGCCGCCATCAGGATCCAAACCGCTTTTCGCGGTTTCTTGGCAAGGAGAGCATTGAGGGCGTTGAAGGGAGTGGTGAGGATTCAGGCTCTTGTGAGGGGAAGACAGGTGAGGAAGCAGGCTGCAGTTACACTGAGGTGCATGCAGGCTCTGGTGCGCGTGCAGGCCAGAGTCCGTGCTCGCCGCGTCAGAATGTCCATTGAAGGACAAGCTGTTCAAGAAATGCTTAATCAGAGACGCTCCAAAGCTGATCTTCTCAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAGAGGAACTCTTCAAGATGTTAAAGCCAAGTTACAATTGCGCCAACAAGGTGCCTTCAAGAGGGAGCGCGCCATTGCTTACTCTCTTGCTCAAAAGCAATGGAGATCAACCCCATGCTCTAGCTCAAGAGCAAACCCTTCGCTCAAGAATATTGACTTTGATAAATCCAACTGGGGTTGGAGTTGGTTGGAGCGTTGGATGGCTGCCAAGCCATGGGAAAGTAGATTAATGGAGGAGTCTCAGGCTGAAAAAAACTCAGATAAAATAACACCACCACCTACTAAGAAATCTGTGGACTCTTTTGGTGCAAATTCGAAACCGTTAGAACCTTCAAGCATGGTTAAAGTTAAGAAGAACAATGTCACAACAAGGGTTTCTGCTAGGCCTCCCCAAATTATTGGACAAGCCACTCGTTCATCTTCGAGTCCAAGTTCCGAATTTCGGTATGATGAGAGTTCTGCATCATCTTCTATGTGTACATCCACAACACCAGTATCTGGTAACACTTGTGATAGAATAGAAGAGGGTAGTAATAACAACCACAGCAGCAACAGCAATAGGCCAAATTACATGAACTTGACAAAGTCAACAAAGGCAAAGCAAAGAAATAGTAGCAATCAAGTGTATAATAGAGCTCAGAGGCAACAATCCATGGATGAGTTTCAGTTCCTCAAAAGGGTACCGGTTTTGTCTAATTTGGATGCAAAGAGCACTGCTGATTCTGATGACCCTTCAATCAACTTTTCAAGGCCACTTAACTTGGACAAGAGCTCAGTGAAACCACGGTGA 1587 0.4625 MGSNAKSKGRNSGAKLKHQTLFVRFTFFEFQNLVTSSHHTTHHTLPFLFSLSNIIAFIPSEVVTELNPISITSTTMGASGKWVKAFIGLKKPSDKDQLNHNHGNKSNKKWRLWRTSSADMSSWKPFKSTTTHKPASQCSDSPPASSKAFTAAMAAVVRAPPKDFKLVRQEWAAIRIQTAFRGFLARRALRALKGVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQEMLNQRRSKADLLKQAEEGWCDSRGTLQDVKAKLQLRQQGAFKRERAIAYSLAQKQWRSTPCSSSRANPSLKNIDFDKSNWGWSWLERWMAAKPWESRLMEESQAEKNSDKITPPPTKKSVDSFGANSKPLEPSSMVKVKKNNVTTRVSARPPQIIGQATRSSSSPSSEFRYDESSASSSMCTSTTPVSGNTCDRIEEGSNNNHSSNSNRPNYMNLTKSTKAKQRNSSNQVYNRAQRQQSMDEFQFLKRVPVLSNLDAKSTADSDDPSINFSRPLNLDKSSVKPR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211464g00042 528 MobiDBLite consensus disorder prediction 501 528 - -
Stsc211464g00042 528 MobiDBLite consensus disorder prediction 343 480 - -
Stsc211464g00042 528 Pfam IQ calmodulin-binding motif 171 190 IPR000048 GO:0005515
Stsc211464g00042 528 Pfam IQ calmodulin-binding motif 193 210 IPR000048 GO:0005515
Stsc211464g00042 528 MobiDBLite consensus disorder prediction 124 144 - -
Stsc211464g00042 528 MobiDBLite consensus disorder prediction 381 480 - -
Stsc211464g00042 528 ProSiteProfiles IQ motif profile. 193 220 IPR000048 GO:0005515
Stsc211464g00042 528 FunFam IQ-domain 11 168 219 - -
Stsc211464g00042 528 ProSiteProfiles IQ motif profile. 169 197 IPR000048 GO:0005515
Stsc211464g00042 528 MobiDBLite consensus disorder prediction 501 520 - -
Stsc211464g00042 528 PANTHER IQ-DOMAIN 5-RELATED 76 492 - -
Stsc211464g00042 528 MobiDBLite consensus disorder prediction 352 373 - -
Stsc211464g00042 528 SMART iq_5 191 212 IPR000048 GO:0005515
Stsc211464g00042 528 SMART iq_5 168 190 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211464g00042 Stsc-Chr211464 255483 257812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211464g00042 76 528 IQD Protein Family AT2G26180 57.018 5.68e-141 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211464g00042 - - gmx:100799714 563.148