Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211464g00029 ATGGAGGATCTCGAGGAAGAAGAGAAGGGAGGAGAGGAGGTGTTAGGTTCGAGCTTGACGATGGAGAAGGTAGCTGCAGCTAAGAAGTTCATAGAGAATCACTATAGGGCTCAGATGAAGAACATCCAAGAGAGGAAGGAGAGGCGTTGGGTTTTAGAAAGACAATTAGCTTCTTCGGATGTGCCAAATGAGGAGCGTGCTAACTTAATCAAAGATTTAGAGAGGAAGGAGACTGAATATATGCGGTTGAAAAGGCACAAGATTTGTGTTAATGATTTTGAGCTTTTGACCATCATTGGAAGGGGAGCCTTTGGAGAGGTCAGACTGTGTCGGGAGAAGAAATCTGGAAACATCTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTGAAGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTACTGGCTGAAGTTGCTAGTCATTGCATTGTGAAACTTTATTACTCATTTCAGGATGCTGACTATTTGTATTTAATAATGGAGTACCTGCCCGGGGGTGATGTGATGACACTATTGATGAGGGAAGACACCTTAAGTGAAGATGTAGCCAGATTTTACATTGCACAAAGTGTTCTAGCCATAGAGTCCATCCATAAACACAATTACATTCACAGAGATATTAAACCAGATAACCTTCTCCTGGATAAAAATGGTCACATGAAGCTCTCAGATTTTGGCCTCTGCAAGCCTCTTGATTGTACTACCCTGTCTACACTGCATGAAAATCAAACCATGGATGATGAAAATGCGGCAGAGCCCATGGATATTGATGGATGCTTTCCTGATGCGGACAATCGGAGCAGCTGGAGAAGTCCACGCGAACAGCTTCAGCATTGGCAGATGAACAGGAGGAAATTAGCATTTTCAACGGTGGGGACACCTGATTACATTGCTCCCGAAGTACTTTTGAAAAAGGGATATGGAATGGAATGTGACTGGTGGTCATTAGGAGCAATAATGTATGAAATGTTAGTTGGTTACCCTCCATTTTATGCTGATGACCCAATAACTACATGCAGAAAGATTGTTCATTGGAGAAATCATTTACGATTTCCAGAAGATGCACGGTTGACACTTGAAGCCAAAGATTTAATCTGTAGGCTTCTATGTGATGTTGATCATAGATTAGGTACTAGAGGAGCACAGGAAATTAAGGTTCATCCTTGGTTCAAGAGTGTGGAGTGGGATAAACTATACCAAATGGAAGCAGCATTCAAGCCACAAGTCAATGGGGAACTGGATACCCAAAACTTCATGAAGTTTGATGAGGTAGATCCACCAACCGGAGCAAGAACTGGGTCTGGATCCTCCCGAAAGATGCTTTTGACTCCCAAAGATTTAAACTTTGTTGGGTATACTTACAAGAACTTTGATGCTGTAAAAGAAGGGCTTCGGCAGTCTCTTGGTGATTCCATGCAAGATTATGCTTCCAAACGGGCAGCCGAGGAAACAGGTTTACAAATGCTGGCAACAACAGGAGATCCGATGCTACCGTAA 1527 0.4289 MEDLEEEEKGGEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWVLERQLASSDVPNEERANLIKDLERKETEYMRLKRHKICVNDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDVMTLLMREDTLSEDVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLSTLHENQTMDDENAAEPMDIDGCFPDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYADDPITTCRKIVHWRNHLRFPEDARLTLEAKDLICRLLCDVDHRLGTRGAQEIKVHPWFKSVEWDKLYQMEAAFKPQVNGELDTQNFMKFDEVDPPTGARTGSGSSRKMLLTPKDLNFVGYTYKNFDAVKEGLRQSLGDSMQDYASKRAAEETGLQMLATTGDPMLP 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211464g00029 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Stsc211464g00029 508 SUPERFAMILY Protein kinase-like (PK-like) 75 443 IPR011009 -
Stsc211464g00029 508 SMART serkin_6 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211464g00029 508 Pfam Protein kinase C terminal domain 419 464 IPR017892 GO:0004674|GO:0005524|GO:0006468
Stsc211464g00029 508 CDD STKc_NDR_like 91 465 - -
Stsc211464g00029 508 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Stsc211464g00029 508 FunFam Non-specific serine/threonine protein kinase 299 418 - -
Stsc211464g00029 508 FunFam Non-specific serine/threonine protein kinase 54 176 - -
Stsc211464g00029 508 SMART pkinase_C_6 401 466 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc211464g00029 508 FunFam Non-specific serine/threonine protein kinase 419 429 - -
Stsc211464g00029 508 FunFam Non-specific serine/threonine protein kinase 177 244 - -
Stsc211464g00029 508 CDD MobB_NDR_LATS-like 27 88 - -
Stsc211464g00029 508 Pfam Protein kinase domain 292 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211464g00029 508 Pfam Protein kinase domain 94 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211464g00029 508 Coils Coil 66 86 - -
Stsc211464g00029 508 ProSiteProfiles Protein kinase domain profile. 93 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211464g00029 508 Gene3D Transferase(Phosphotransferase) domain 1 179 417 - -
Stsc211464g00029 508 ProSiteProfiles AGC-kinase C-terminal domain profile. 401 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc211464g00029 508 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Stsc211464g00029 508 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211464g00029 Stsc-Chr211464 186787 194124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211464g00029 1 507 AGC Kinase Gene Family AT4G33080 80.588 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Stsc211464g00029 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211464g00029 K08790 - gmx:100815717 947.192