Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211462g00041 ATGGAAATGATGACAAAGAAAGAAGACAACATGAAGAGGAGTTGGATGTCAATGCCACAAAGTGAGTTCCAAGTAGTAGCAAGGGGTAACAAGAGGAGAAGGAGAGAGCTTACAGCAGCTGTACTAACAAATGAAGAAAACCAAAGCAAGAAACAAATATTGCAGCAACAGCAAGTTGATCAGAGTTCCACTACCAACACTACAAAGAGAAGTTCAAGATTTAGGGGTGTCAGCAGACATAGATGGACGGGTCGATATGAGGCTCACTTATGGGACAAGCTCTCTTGGAACATAACTCAAAGGAAGAAAGGGAAGCAAGGCGCATACGACGAAGAAGAATCTGCAGCTAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACATCAACTTTCACCAATTTTCCGATCTCAGACTATGAGAAAGAGATTGAAGTAATGCAGACTATGACAAAAGAGGAGTACTTGGCTACTTTAAGGAGAAAGAGCAGTGGTTTCTCAAGAGGTGTATCAAAGTATAGGGGAGTTGCAAGACACCACCACAATGGTAGATGGGAAGCAAGGATTGGAAGGGTTTTTGGAAATAAATATCTCTACCTCGGCACCTACAGCACCCAAGAAGAAGCTGCTCGCGCTTATGACATAGCAGCCATTGAGTACAGAGGGATCCATGCCGTAACCAACTTTGATTTGAGTTCTTACATACGGTGGTTAAAGCCTTCAGAGGGGAACATCTCAGAATCAAAACTCGAATCAGAGGTAACACCGGAGTCTCAGACAGCGGTGTCTCAAACTCATTCACCAACAGAGGGGTCTAAATCCTTGGCCATTCATCCATTCAGTTCAGATTATCTTAATTGCCCTCAAAATCACGAAATCTTTGAAAACACAACATTCCAATTCTCCAGCAATAAGTCATCTTCTCCAACCGCACTCGGCCTCCTGCTGCGGTCATCGATATTTAGAGAATTGGTTGAAAAGAATTTGAACATGTCTGGGGATGAAACTGATGGGGAAGACACAAAGGATCAGCAGCCACAGATAACTTGTGATGATGAGTTGGGTGGTATCTTTTATGATGGAATTACTGATATCCCTTATCTGTGA 1107 0.4291 MEMMTKKEDNMKRSWMSMPQSEFQVVARGNKRRRRELTAAVLTNEENQSKKQILQQQQVDQSSTTNTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPISDYEKEIEVMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGIHAVTNFDLSSYIRWLKPSEGNISESKLESEVTPESQTAVSQTHSPTEGSKSLAIHPFSSDYLNCPQNHEIFENTTFQFSSNKSSSPTALGLLLRSSIFRELVEKNLNMSGDETDGEDTKDQQPQITCDDELGGIFYDGITDIPYL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211462g00041 368 Gene3D AP2/ERF domain 171 232 IPR036955 GO:0003700|GO:0006355
Stsc211462g00041 368 Gene3D AP2/ERF domain 72 138 IPR036955 GO:0003700|GO:0006355
Stsc211462g00041 368 MobiDBLite consensus disorder prediction 246 272 - -
Stsc211462g00041 368 MobiDBLite consensus disorder prediction 41 72 - -
Stsc211462g00041 368 Pfam AP2 domain 171 222 IPR001471 GO:0003700|GO:0006355
Stsc211462g00041 368 Pfam AP2 domain 72 128 IPR001471 GO:0003700|GO:0006355
Stsc211462g00041 368 SUPERFAMILY DNA-binding domain 72 138 IPR016177 GO:0003677
Stsc211462g00041 368 PRINTS Ethylene responsive element binding protein signature 212 232 IPR001471 GO:0003700|GO:0006355
Stsc211462g00041 368 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Stsc211462g00041 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 295 - -
Stsc211462g00041 368 SMART rav1_2 172 236 IPR001471 GO:0003700|GO:0006355
Stsc211462g00041 368 SMART rav1_2 73 142 IPR001471 GO:0003700|GO:0006355
Stsc211462g00041 368 MobiDBLite consensus disorder prediction 41 76 - -
Stsc211462g00041 368 FunFam AP2-like ethylene-responsive transcription factor 171 232 - -
Stsc211462g00041 368 SUPERFAMILY DNA-binding domain 171 232 IPR016177 GO:0003677
Stsc211462g00041 368 ProSiteProfiles AP2/ERF domain profile. 172 230 IPR001471 GO:0003700|GO:0006355
Stsc211462g00041 368 CDD AP2 171 232 IPR001471 GO:0003700|GO:0006355
Stsc211462g00041 368 CDD AP2 72 138 IPR001471 GO:0003700|GO:0006355
Stsc211462g00041 368 ProSiteProfiles AP2/ERF domain profile. 73 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211462g00041 Stsc-Chr211462 275621 277599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211462g00041 69 275 AP2-EREBP Transcription Factor Family AT5G57390 58.333 6.01e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc211462g00041 AP2 1.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211462g00041 - - ahf:112716370 657.907