Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211462g00038 ATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTCGTCACATTTGAGGGTATTGCAATCCTCACACCTAGGGGAAGATATAGTGTTGAGCTACATCTGTCATTCTTGCGTCTTCAGGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTAGTTCGCCTATTTTTACTTCCCAAGTCTAATCAGCCACATACGTTCGTTGTTATTAGTCTGGATCCACCTATTCGGAAGGGACAAACTCTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTTGTTCAAAGTGAGTTGGCTATGAGTGAAGATCTTTACAACAGCAAGTACAAGGACAAGTTGGAGTTATCCTATAAGGGTCTCATCCATGAAGTGTTCACAACAATATTGCGTGGCTTGTCTGGTGCCAAAGTTACCAAACCAGGAAAATTTAGAAGTTGCCAAGATGGTTATGCAGTAAAATCATCTTTAAAAGCTGAAGATGGAATTCTTTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCAACTCTTATTCTTCATGAAGAGATTGACTATGTTGAATTTGAGCGGCATGGTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTGGTCAGACTAAAGTCTGATCAAGAGCATCTTTTTCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGGTTTCATCAGTTCAAAGGGATTGAAAATTATGAACTTGGGAGATGCCCAACCAGGATCTGTGGGTATGGCTAAGGTTCTCGAGAATGATGATGATGACGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCTGGCGATGAAAGTGATGAGGAGGATGAAGATTTTGTTGCTGATAAGGATGATGAAGGCTCTCCAACTGATGATTCTGGAGGAGAAGATTCTGATGCTAGTATGAGTGGTGATGAGAAAGAGAAGCCTGCCAAAAAGGAATCAAAGAAGGAGATGCCTTCTAAGGCATCTACTTCAAAAAGGAAAATGAAAGATGCTGATGAAGATGGAAAAAAGAAAAAGCAGAAAAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTTATGTTCTTCTCCCAAATGGAAAGAGAGAATCTAAAGAAGACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTCGGAGAGAAATGGAAAAAGATGTCAGCGGAGGAGAAGGAGCCATATGAGGCGAAAGCTCGCGCTGACAAAAAACGTTACAAGGATGAGATTAGTGGCTACAAGAATCCACAACCTGTGAATATCGATTCAGGAAATGAGACTGACAGTGCTTGA 1341 0.4101 MSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVQSELAMSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHGAGGSNMHYFDLLVRLKSDQEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQPGSVGMAKVLENDDDDAVDPHLERIRNEAGDESDEEDEDFVADKDDEGSPTDDSGGEDSDASMSGDEKEKPAKKESKKEMPSKASTSKRKMKDADEDGKKKKQKKKKDPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKKRYKDEISGYKNPQPVNIDSGNETDSA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211462g00038 446 Gene3D - 144 251 IPR011993 -
Stsc211462g00038 446 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 415 - -
Stsc211462g00038 446 SUPERFAMILY HMG-box 349 431 IPR036910 -
Stsc211462g00038 446 FunFam FACT complex subunit SSRP1 144 252 - -
Stsc211462g00038 446 SMART hmgende2 361 431 IPR009071 -
Stsc211462g00038 446 Gene3D - 4 143 - -
Stsc211462g00038 446 MobiDBLite consensus disorder prediction 432 446 - -
Stsc211462g00038 446 MobiDBLite consensus disorder prediction 403 446 - -
Stsc211462g00038 446 MobiDBLite consensus disorder prediction 275 369 - -
Stsc211462g00038 446 FunFam Fact complex subunit ssrp1 4 143 - -
Stsc211462g00038 446 Pfam Histone chaperone Rttp106-like 155 244 IPR013719 -
Stsc211462g00038 446 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 362 430 IPR009071 -
Stsc211462g00038 446 CDD HMG-box_AtSSRP1 358 433 - -
Stsc211462g00038 446 Gene3D High mobility group box domain 345 437 IPR036910 -
Stsc211462g00038 446 MobiDBLite consensus disorder prediction 311 353 - -
Stsc211462g00038 446 MobiDBLite consensus disorder prediction 280 304 - -
Stsc211462g00038 446 SUPERFAMILY PH domain-like 11 245 - -
Stsc211462g00038 446 CDD PH2_SSRP1-like 147 246 - -
Stsc211462g00038 446 SMART Rtt106_2 153 246 IPR013719 -
Stsc211462g00038 446 Pfam HMG (high mobility group) box 362 430 IPR009071 -
Stsc211462g00038 446 PRINTS Structure-specific recognition protein signature 69 85 IPR000969 GO:0003677|GO:0005634
Stsc211462g00038 446 PRINTS Structure-specific recognition protein signature 221 239 IPR000969 GO:0003677|GO:0005634
Stsc211462g00038 446 PRINTS Structure-specific recognition protein signature 179 196 IPR000969 GO:0003677|GO:0005634
Stsc211462g00038 446 PRINTS Structure-specific recognition protein signature 46 62 IPR000969 GO:0003677|GO:0005634
Stsc211462g00038 446 PRINTS Structure-specific recognition protein signature 24 40 IPR000969 GO:0003677|GO:0005634
Stsc211462g00038 446 PRINTS Structure-specific recognition protein signature 134 147 IPR000969 GO:0003677|GO:0005634
Stsc211462g00038 446 PRINTS Structure-specific recognition protein signature 161 179 IPR000969 GO:0003677|GO:0005634
Stsc211462g00038 446 PRINTS Structure-specific recognition protein signature 205 221 IPR000969 GO:0003677|GO:0005634
Stsc211462g00038 446 MobiDBLite consensus disorder prediction 403 427 - -
Stsc211462g00038 446 FunFam FACT complex subunit SSRP1 346 439 - -
Stsc211462g00038 446 CDD PH1_SSRP1-like 12 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211462g00038 Stsc-Chr211462 266346 269369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211462g00038 358 430 ARID Transcription Factor Family AT1G04880 39.726 1.80e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc211462g00038 Rtt106 7.4e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211462g00038 K09272 - gmx:100805034 760.37