Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211462g00037 ATGGCGGGAAGTGCAACTAACAAGGTTGCACTAATATTTTTGGCTACTTTGGCCGTTGTTGTTCGATGCATTGAAGGTAATGGGCATGTGGAGTTTGATGATTATATCAAAAGACAAGAGAGGAAGGCTTATGAACTTGCCCTCCAAACCTACGTCCCAAACCCTTTGGAAGTTGTGCATGAGATAAACCATCACGTTCACCTTCTGGCGAACAAAACGGAATCAAGGAGGAATCTGATGAAGATAAAGACAAGGGACAGAAAAGCAGGGATGTGTGAATACACAAACCCCATTGACGCTTGCTGGAGGTGCGATCCTAAATGGGCCGACAACCGCTACAAGCTCGCGGAGTGCGCCAAGGGATTCGGAAGGAGGGCCACGGGAGGCTTAGGCGGCCCAATTTACGTCGTCACTGACTCGTCAGATGAAGACTTAATAAATCCTAAACCCGGAACCCTAAGATACGCAGTGCTCCAGGACGGACCACTGTGGATCACATTTGGAAGAAGCATGGTGATCGAGTTGCAGCAAGAGTTGATCATCACCTCCGACAAGACCATCGACGGACGCGGCGCCAGTGTTTATATAAAGGGCGGCGCCGGGCTGACGATTCAGTACGTGAACAATGTGATCGTTCATGGACTTCACATCAAGGGAATCAAGGCAAAACTTGGGGCCGTTATAAGGTCGAATTCACAGCATTTTGGTAAGAGGACGAGAAGTGATGGTGATGGAATCAACGTGTTCGGGTCCACCAACATTTGGATCGATCATATCTCCTTGTCTGATTGTGATGATGGCCTCATCGATGTCGTTGCTGCTTCCACTGGCATCACTATCTCAAATTGCCACATGACCAAACACAATGATGTAATGTTGTTTGGAGCTGATGACACTTACACGAAGGACAAGATCATGCAAATAACGGTGGTATTCAACCACTTCGGACAAGGATTGGTTCAAAGGATGCCGAGGTGCAGATTCGGATTCTTCCATGTTCTAAACAACGACTACACCCACTGGCTAATGTACGCCATAGGAGGAACCTCAAACCCAACAATTCTTAGCCAGGGCAACCGCTTCAATGCTCCAAACAACGACGCTGCGAAGGAGGTCACCCACCGCGGCAACGTGAAGCCGGAGGTGTGGTCGAAGTGGCAGTGGCAGTCGGAGTATGATCGGCTTGATAACAATGCACGGTTCGTTGAGTCTGGTGCTCCCATTACCAACTTACCATTCAACAAAGGACTGATTATGAAACCAAGAGATGGTTCTCATGCTGACAGACTCACTAACTATGCTGGTGCTCTTACTTGCATTGTTGGCAAACCTTGCTAG 1338 0.4836 MAGSATNKVALIFLATLAVVVRCIEGNGHVEFDDYIKRQERKAYELALQTYVPNPLEVVHEINHHVHLLANKTESRRNLMKIKTRDRKAGMCEYTNPIDACWRCDPKWADNRYKLAECAKGFGRRATGGLGGPIYVVTDSSDEDLINPKPGTLRYAVLQDGPLWITFGRSMVIELQQELIITSDKTIDGRGASVYIKGGAGLTIQYVNNVIVHGLHIKGIKAKLGAVIRSNSQHFGKRTRSDGDGINVFGSTNIWIDHISLSDCDDGLIDVVAASTGITISNCHMTKHNDVMLFGADDTYTKDKIMQITVVFNHFGQGLVQRMPRCRFGFFHVLNNDYTHWLMYAIGGTSNPTILSQGNRFNAPNNDAAKEVTHRGNVKPEVWSKWQWQSEYDRLDNNARFVESGAPITNLPFNKGLIMKPRDGSHADRLTNYAGALTCIVGKPC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211462g00037 445 Pfam Pectate lyase 179 361 IPR002022 -
Stsc211462g00037 445 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Stsc211462g00037 445 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Stsc211462g00037 445 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Stsc211462g00037 445 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Stsc211462g00037 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Stsc211462g00037 445 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Stsc211462g00037 445 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Stsc211462g00037 445 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Stsc211462g00037 445 SUPERFAMILY Pectin lyase-like 96 436 IPR011050 -
Stsc211462g00037 445 Pfam Pectate lyase, N terminus 31 79 IPR007524 GO:0030570
Stsc211462g00037 445 PANTHER PECTATE LYASE 18-RELATED 43 443 IPR045032 GO:0030570
Stsc211462g00037 445 Gene3D - 95 438 IPR012334 -
Stsc211462g00037 445 SMART amb_all 170 367 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211462g00037 Stsc-Chr211462 260438 263287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211462g00037 9 445 Polysaccharide Lyase AT1G14420 54.324 1.98e-172 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211462g00037 K01728 - gmx:100810615 620.928