Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211462g00032 ATGGCTGATGAAGGTGATGCCATGCATGCTGTTCTCAAGGAAGCTGTGGACTTGGAAAACGTGCCAATTGAGGAAGTGTTTCAGACTCTAAGGTGTGATCATAATGGTCTCACAACAAAAGCTGCTGAGGAGAGACTTGGTATCTTTGGCCATAACAAACTTGAGGAGAAACAGGAAAGCAAGCTTTTGAAGTTCTTGGGATTCATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCCTTGGCAAACGGAGGAGGGAAACCACCTGATTGGCAAGACTTTGTTGGGATTATCACACTTCTGCTTATCAATTCGACGATAAGTTTTATAGAGGAGAACAATGCTGGTAATGCTGCCGCCGCTCTCATGGCTCGTCTAGCTCCCAAAGCTAAGATCCTTCGAGACGGGAAATGGGTTGAGGAGGATGCCAGTATCCTTGTTCCGGGTGATATAATTACCATTAAGCTTGGGGATATTATCCCCGCAGATGCTCGTCTCCTTGAAGGTGATCCATTGAAGATTGATCAGTCTGCACTAACAGGCGAGTCGCTTCCTGTCACAAAAGGCCCCGGTGATAGTGTTTATTCAGGGTCTACATGCAAGCAAGGAGAGATCGAAGCGGTTGTTATTGCCACCGGAGTTCATACCTTCTTCGGCAAGGCTGCTCATCTGGTCGACTCTACCAATCAAGTTGGCCATTTTCAATCGGTCCTAACCGCAATTGGGAACTTCTGCATATGCTCGATTGCTGTGGGAATGATAGTAGAGATCATCGTCATGTATCCAATTCAGCATCGAAAGTATCGCCCCGGGATAGACAATCTGCTTGTGCTCCTTATCGGAGGAATTCCGATTGCCATGCCTACTGTTTTGTCAGTGACAATGGCAATTGGATCCCATCGCCTATCTCAGCAGGGTGCTATTACTAAAAGAATGACAGCAATAGAAGAAATGGCTGGTATGGATGTATTGTGTAGTGACAAAACCGGAACTCTTACGTTGAATAAACTAACAGTTGACAAGAATCTTATTGAGGTTTTTGCTAAAGGAGTTGACGCGGATATGGTGGTTCTCATGGCTGCTCGCGCCTCAAGATTGGAAAACCAAGATGCTATCGATACGGCGATTGTAGGGATGCTGAGTGATCCGAAGGAGGCAAGAGCTGGTATTCGAGAGGTTCATTTCCTTCCTTTCAATCCAACCGACAAGAGGACAGCTCTGACTTACATAGACGACAGTGATGGTAAAATGTATCGTGTCAGCAAAGGTGCACCGGAACAGATCTTGAATCTTGCACACAATAAATCAGAGATTGAGCGTAGAGTTCATTCCGTCATTGATAAGTTTGCTGAGCGAGGATTACGGTCTCTTGCAGTAGCTTTCCAGGAAGTTCCTGAAGGAAGGAAGGAAAGTCCAGGAGGACCGTGGCAATTTATCGGACTCTTGCCTCTTTTTGATCCACCTAGACATGATAGTGCTGAGACAATACGCCGGGCGTTGAATCTTGGAGTAAATGTTAAAATGATAACAGGTGATCAGTTAGCTATAGGAAAGGAAACAGGGCGACGTCTAGGAATGGGAACCAACATGTACCCTTCGTCGGCATTATTGGGCCAAAACAAGGATGAATCAATTTCTGCCTTGCCAGTTGATGAACTCATTGAAAAAGCTGATGGATTTGCTGGTGTTTTCCCTGAGCACAAATATGAGATTGTGAAACGTTTACAGGCGAGGAAACACATATGTGGGATGACTGGCGATGGTGTTAATGATGCCCCGGCGCTTAAAAAAGCAGATATTGGAATAGCTGTTGCTGATGCAACTGATGCGGCTCGTAGTGCATCCGACATTGTTCTAACAGAACCAGGTCTAAGTGTTATTATCAGTGCTGTATTGACCAGTAGAGCAATATTCCAGAGGATGAAGAACTACACGATTTATGCAGTTTCCATCACAATCCGTATTGTGCTTGGCTTCATGCTACTTGCTCTCATATGGCAATTTGATTTTCCACCATTCATGGTGCTGATTATTGCTATCCTTAATGATGGCACCATTATGACGATATCTAAGGACAGGGTAAAACCATCTCCATATCCAGATAGCTGGAAGCTGGCAGAGATATTTACTACCGGAATCATTCTCGGCGGTTATTTGGCTATGATGACAGTTATCTTCTTTTGGGCAGCATATAAAACAGATTTTTTCCCTAGAACATTTGGGGTGTCAAGTCTTCAGAAGAAGGATGTGGATGACTTCAGAAAGCTTGCGTCGGCGGTATACCTACAAGTTAGTACAATTAGCCAGGCTCTCATCTTCGTCACACGGTCACGGAGTTGGTCTTATGTCGAGCGTCCCGGTTTGTTTCTTGTATCGGCTTTTGTTATTGCCCAGCTGATAGCGACACTAATTGCGGTTTACGCAAATTGGAGCTTCGCGGCAATTGAGGGGGTTGGATGGGGTTGGGCTGGTGTTGTCTGGCTTTATAATCTCATCTTTTATATTCCACTCGATTTCATTAAGTTTGTTATTCGATATGCCTTGAGTGGCCGTGCTTGGGATCTTGTTATTGAACAAAGGATTGCTTTCACAAGGAAAAAGGATTTCGGAAAGGAAGAACGCGAACTTAAATGGGCGCATGCACAGAGAACTCTTCACGGCCTTCATCCACCGGAGACAAAGATGTTCAATGAAAGAACAACTTACACTGAACTGAATCAAATGGCTGAAGAGGCTAAAAGAAGAGCAGAGATTGCAAGATTGAGAGAACTGCATACACTGAAAGGGCATGTTGAGTCAGTGGTTAGACTGAAGGGGCTTGACATTGACACAATACAGCAAGCATACACTGTGTGA 2874 0.4485 MADEGDAMHAVLKEAVDLENVPIEEVFQTLRCDHNGLTTKAAEERLGIFGHNKLEEKQESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMARLAPKAKILRDGKWVEEDASILVPGDIITIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQSVLTAIGNFCICSIAVGMIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDADMVVLMAARASRLENQDAIDTAIVGMLSDPKEARAGIREVHFLPFNPTDKRTALTYIDDSDGKMYRVSKGAPEQILNLAHNKSEIERRVHSVIDKFAERGLRSLAVAFQEVPEGRKESPGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESISALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPRTFGVSSLQKKDVDDFRKLASAVYLQVSTISQALIFVTRSRSWSYVERPGLFLVSAFVIAQLIATLIAVYANWSFAAIEGVGWGWAGVVWLYNLIFYIPLDFIKFVIRYALSGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLHPPETKMFNERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211462g00032 957 Gene3D - 328 628 IPR023214 -
Stsc211462g00032 957 Pfam E1-E2 ATPase 132 310 - -
Stsc211462g00032 957 FunFam Plasma membrane ATPase 343 491 - -
Stsc211462g00032 957 FunFam ATPase 4 plasma membrane-type 576 822 - -
Stsc211462g00032 957 Gene3D - 906 957 - -
Stsc211462g00032 957 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Stsc211462g00032 957 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 813 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc211462g00032 957 Coils Coil 908 928 - -
Stsc211462g00032 957 SFLD p-type atpase 313 642 IPR044492 -
Stsc211462g00032 957 CDD P-type_ATPase_H 36 848 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc211462g00032 957 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Stsc211462g00032 957 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 854 IPR023298 -
Stsc211462g00032 957 FunFam Plasma membrane ATPase 485 639 - -
Stsc211462g00032 957 Gene3D - 343 491 IPR023299 GO:0000166
Stsc211462g00032 957 SUPERFAMILY HAD-like 327 638 IPR036412 -
Stsc211462g00032 957 SFLD Haloacid Dehalogenase 313 642 - -
Stsc211462g00032 957 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Stsc211462g00032 957 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Stsc211462g00032 957 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Stsc211462g00032 957 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Stsc211462g00032 957 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Stsc211462g00032 957 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Stsc211462g00032 957 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Stsc211462g00032 957 NCBIfam HAD-IC family P-type ATPase 103 350 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211462g00032 957 NCBIfam HAD-IC family P-type ATPase 566 680 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211462g00032 957 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211462g00032 957 PRINTS H+-transporting ATPase (proton pump) signature 767 788 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211462g00032 957 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211462g00032 957 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211462g00032 957 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211462g00032 957 FunFam Plasma membrane ATPase 134 218 - -
Stsc211462g00032 957 PANTHER CALCIUM-TRANSPORTING ATPASE 19 890 - -
Stsc211462g00032 957 Pfam haloacid dehalogenase-like hydrolase 327 605 - -
Stsc211462g00032 957 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Stsc211462g00032 957 Gene3D - 96 822 - -
Stsc211462g00032 957 Gene3D - 134 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211462g00032 Stsc-Chr211462 221941 227928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211462g00032 1 957 Primary Pumps ATPases AT5G62670 89.760 0.0 1745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211462g00032 K01535 - gmx:100805218 1709.12