Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211462g00022 ATGAATGACGGCGATGATGAGATAGATGATCAGTTGGATTTGCCTGGCCGACAAGGATGCGGAATTCCTTGCTACTGGTCTAAGAGGACTCCTAAACATAGAGGGATGTGTGGGAGTTGTTATTCTCCGTCCCTGTCGGATACTTTAAGGAGGAAAGGAAGTAGCATACTCTGTGGAAGTCAAACTAGTTATCCCAGGCACCGGAGATCACGCAAGATGTCTTGGAAGAGTGCTCAGGGTGTTATTCCTTTGCTCACTAATGGGGGTGATGGTAGGGTAGGGTCATCTATAGGAACTGGTAGGAGCGATGACGAACTTTCTACAAACTTTGGGGAGCTGGACCTGGAGGGCTTGAGTAGATTGGATGGAAGGCGCNNNNNNNNNNTAGCTCTCAATGGGGAACGGGAGGAGGAAGACAGTCCAGAAAATAGTAGGAGTTTCAGCCAGAAGTATAGGCCTATATTCTTCAGTGAATTGATTGGGCAGAATATAGTGGTTCAGTCACTCATGAATGCTGTTTCAAGGAGTCGAATAGCTCCTGTTTATCTTTTCCAAGGTCCCCGCGGGACTGGTAAAACCTCGACAGCCCGAATATTTGCTGCTTCCCTGAATTGTGTGGCTCCTGATGAGAGTAAGCCTTGTGGCTACTGCAGGGAATGTACTGATTTTATTTCTGGCAAGAGCAGCGATCTACTGGAAGTTGATGGAACCAATAAAAAAGGAATTGATAAAGCTAGATACCTACTCAAAAGATTATCAGTTGTTTCATCATCCGCTTCCTCACGGTATACAGTTTTTGTTATTGATGAGTGTCACCTGTTATCATCCAAGGCATGGCTGGGGTTTCTCAAGTTTCTCGAGGAACCACCTCAGCGGGTTGTATTCATATTCATCACATCTGATCTTGACAATGTGCCTCGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAACAAAATTAAAGATGCGGATATTGTGGATAGATTGAGGAAAATATCTGCTCAGGAGAACCTTGATGTTGAAGAAGATGCTTTGGACCTCATTGCTACAAATGCAGATGGTTCACTTCGAGATGCGGAAACAATGTTAGAACAACTTAGTTTGCTTGGAAAGAGAATTACTACTTCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAACTGTTGGAACTTTTGGAATTAGCAATGTCATCAAACACTTCAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTCATTATGGACATCATTGCTGGATCATACACAGTCATTGATTCCAAACCGGATGAAGCATTCCTTGGTGGACGAAGTTTGAATGACTCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGCGAACGCTCAACATGGTTCACGGCAACACTCTTGCAACTTGGTTCTGTGTCATCTCCAGATCTTACTCAGTCCGGCAGTAGCAGGAGGCAGAGCTGTNNNNNNNNNNCATCAAGTGCTTCAAGAGAAGTTAATTCTGCCAAGCATATGTCTGACCTTAAATATATGCCCCGGAAGTCAATATCACCTACATCCCAGCAAAAAGCAGTAAATGGAAATTTTGGCCATCAAAGGAATATTTCCTCAAATATTGATGGTTTAAGCTTGAAATCAAAGCCATCGAATAGCCCAGTTCTAGACGATGGCTCCACCATTGTCTCATCTGATGATCTTATGGTTGGGAATATGATGTTTAGATGCATAGATTCTGGAAAGTTACATGATATCTGGGCACGTTGTATTGGGAGGTGTCACTCAAAAACATTGAGGCAGTTGCTACTCAATCATGGAAAGCTTGTATCCATATGCGAAATTGAAGGTGTTTTAGTAGCATATGTTGCATTTGGGGATGGAGATATTAAACTCAGGGCAGAGAGGTTTTCCAGAAGTATTACAAACTCCATGGAGATGGTTCTTAGACGTAATGTAGATGTCAGAATTATCCACCTGCCAGATGGTGTAGGTGAAACTCAAGTTAATATACCAAGGCAGGCTGAGTCAGCATTGGGAGTTGAGAAGGAACAAAGAGGAGGTCTTGCGAATGGAACAGATCCTTTGCTTGATGGAAACCTTCAATCTGCAGCCAATTCCTCTGGAAATGGTGGGAGGGAGAGAAGACAGGACAATCCAATGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGCTGGAAACTGCTTGGTTACAGGCTGTAGAAAAAGGTTCGCCAGGATCGTTGAGTCGTTTGAGACCCGAGAAGAATCAGGTCCTGCCACAGGATGGTATCTATTGCATAGACCCAATGGAGTCCATGGATTCAGCAAGATTTTCCTCACAGCAGCATTGGGAAGATGAGCAGAGTAATGAAGTCAAAATTTTGAGTGCCAAAAATGGAAGGGTCTTACAGAAAGACCAGACTGGTAGAAAGGCAGATTGTTATCCCATGTCCCCAAGTTTACTGCATAACAGCAGCTTAGCAACAAGTTCCAGCAAAGACAATCCGGGATATGAATCGAGCACCGGAGCTGGTGGTTGTGGATTTTTATGCTGGAATAAGGCAAAGCCTAAGAGGGTAATCAAGGTAAGAGGTGGTACTCCGGTTGGTTCGCGTAAAGTTGGCCGCTTCCCACTGTTTGGGGAGTGTGGTAAGCAAAGGAAAAGGGACGTTATTACCACATAA 2760 0.4366 MNDGDDEIDDQLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSILCGSQTSYPRHRRSRKMSWKSAQGVIPLLTNGGDGRVGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRXXXXALNGEREEEDSPENSRSFSQKYRPIFFSELIGQNIVVQSLMNAVSRSRIAPVYLFQGPRGTGKTSTARIFAASLNCVAPDESKPCGYCRECTDFISGKSSDLLEVDGTNKKGIDKARYLLKRLSVVSSSASSRYTVFVIDECHLLSSKAWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDADIVDRLRKISAQENLDVEEDALDLIATNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSNTSETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVIDSKPDEAFLGGRSLNDSELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVSSPDLTQSGSSRRQSCXXXXSSASREVNSAKHMSDLKYMPRKSISPTSQQKAVNGNFGHQRNISSNIDGLSLKSKPSNSPVLDDGSTIVSSDDLMVGNMMFRCIDSGKLHDIWARCIGRCHSKTLRQLLLNHGKLVSICEIEGVLVAYVAFGDGDIKLRAERFSRSITNSMEMVLRRNVDVRIIHLPDGVGETQVNIPRQAESALGVEKEQRGGLANGTDPLLDGNLQSAANSSGNGGRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGIYCIDPMESMDSARFSSQQHWEDEQSNEVKILSAKNGRVLQKDQTGRKADCYPMSPSLLHNSSLATSSSKDNPGYESSTGAGGCGFLCWNKAKPKRVIKVRGGTPVGSRKVGRFPLFGECGKQRKRDVITT 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211462g00022 919 Gene3D - 138 319 IPR027417 -
Stsc211462g00022 919 MobiDBLite consensus disorder prediction 499 527 - -
Stsc211462g00022 919 SUPERFAMILY post-AAA+ oligomerization domain-like 392 493 IPR008921 GO:0003677|GO:0006260
Stsc211462g00022 919 NCBIfam DNA polymerase III subunit gamma/tau 146 495 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Stsc211462g00022 919 Coils Coil 457 484 - -
Stsc211462g00022 919 Gene3D - 322 384 - -
Stsc211462g00022 919 SMART AAA_5 178 328 IPR003593 GO:0016887
Stsc211462g00022 919 FunFam DNA polymerase III subunit gamma/tau 322 384 - -
Stsc211462g00022 919 CDD AAA 160 318 - -
Stsc211462g00022 919 MobiDBLite consensus disorder prediction 539 556 - -
Stsc211462g00022 919 Pfam DNA polymerase III subunits gamma and tau domain III 375 498 IPR022754 GO:0003887
Stsc211462g00022 919 Pfam DNA polymerase III, delta subunit 161 321 - -
Stsc211462g00022 919 MobiDBLite consensus disorder prediction 700 746 - -
Stsc211462g00022 919 MobiDBLite consensus disorder prediction 720 739 - -
Stsc211462g00022 919 MobiDBLite consensus disorder prediction 499 556 - -
Stsc211462g00022 919 FunFam DNA polymerase III subunit gamma/tau 142 320 - -
Stsc211462g00022 919 CDD HLD_clamp_pol_III_gamma_tau 321 384 IPR045085 -
Stsc211462g00022 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 368 IPR027417 -
Stsc211462g00022 919 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 148 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211462g00022 Stsc-Chr211462 141207 146019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211462g00022 142 436 Core DNA Replication Machinery Family AT1G21690 24.671 1.52e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211462g00022 - - adu:107471079 1588.55