Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211462g00013 ATGAGTTCCATCTGGAAAGAGAATAATGAGGTTAAGGAAGAGGAAGTTGAGGTGAATAATAATAATAACAATAATGATGATTTTCTTTCAGCTCTGGTACTTAGTTTTAGTCGAGTGATTCCTGCAATCATAAATGCAGCCATTGAACTGAATCTGTTTGAGATCATATCAAAGGCAGAGAGTTCAGAAGGGATGTCTGCCATGGAAATTGCTTCAAAGCTTCCGATTTCGGATATCGATATGGCGGCGAAGAGGCTGGAGCGCATGTTGCCTTCATTGGCAAGTCACTCGCTTCTTGAATGTTCCATTCGCACCAACCAAGATGGCAGCAAAGAGAGGGTTTATGGTCTCTCAAATGTTGGTGCCTACTTCATCATCAATAATTCCTCTCAAGGCTCAGTGGCTCCTCTCTCTGTTCTCTTTCATCAAGTATATGGTGACCTTTGGAAGGATGTAAAAGATGCAATTTTGGACCCAAATAACAATAATCATTTTGAAAGAGTTCATGGGATGCCAGCATTCGAATATATGAAGAGAAATAAAGAAGTGAGCCATGTTTTTGACCAAACAATGGCCCATTCTGGCCCACTAGGAATGAAAAGGGTCATAAACCAGTACAACGGTTTTGAGGGACTGACAACATTGGTTGATGTTGGAGGTGGAATAGGACAATCCTTAACCTTGATTATTTCTGCGTTTCCTTCAATTAAGGGAGTTAATTTTGATATGCCTCATGTTGTGAAAAACGCACCACCTTATCCAGGGATAGAGCACGTTGGAGGAGACATGTTCCAAAGTATTCCAAAGGGTGATGCCATTATGCTAAAGCATGTGTGTCATAATTGGTCTGACGAAGAATGTGTGAAATTCCTGAGGAACTGCCACGAGGCCTTGCCACAAGATGGGAAGGTGATTGTTTTGGACTTCATAATGCCAGAAATTCCGAATTCAAGCAGTGAATCAAAACATGCTTGCGACATGGACTACCTCATGTTTATAATTCATGGTGGAAAGGAGAGAACTCAGAAAGAATTTGAGAGGCTATGTATCAACTCTGGGTTTTCCAGATTCCAACTTGCTTGCCCTACTTCTTTAACTGCGTTTGGAGTCATGGAGTTTTACAAATAA 1128 0.4105 MSSIWKENNEVKEEEVEVNNNNNNNDDFLSALVLSFSRVIPAIINAAIELNLFEIISKAESSEGMSAMEIASKLPISDIDMAAKRLERMLPSLASHSLLECSIRTNQDGSKERVYGLSNVGAYFIINNSSQGSVAPLSVLFHQVYGDLWKDVKDAILDPNNNNHFERVHGMPAFEYMKRNKEVSHVFDQTMAHSGPLGMKRVINQYNGFEGLTTLVDVGGGIGQSLTLIISAFPSIKGVNFDMPHVVKNAPPYPGIEHVGGDMFQSIPKGDAIMLKHVCHNWSDEECVKFLRNCHEALPQDGKVIVLDFIMPEIPNSSSESKHACDMDYLMFIIHGGKERTQKEFERLCINSGFSRFQLACPTSLTAFGVMEFYK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211462g00013 375 CDD AdoMet_MTases 214 311 - -
Stsc211462g00013 375 Pfam Dimerisation domain 44 94 IPR012967 GO:0046983
Stsc211462g00013 375 SUPERFAMILY "Winged helix" DNA-binding domain 26 126 IPR036390 -
Stsc211462g00013 375 Pfam O-methyltransferase domain 149 355 IPR001077 GO:0008171
Stsc211462g00013 375 PANTHER O-METHYLTRANSFERASE 34 365 IPR016461 GO:0008168
Stsc211462g00013 375 Gene3D Vaccinia Virus protein VP39 128 375 IPR029063 -
Stsc211462g00013 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 375 IPR016461 GO:0008168
Stsc211462g00013 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 140 364 IPR029063 -
Stsc211462g00013 375 Gene3D - 8 124 IPR036388 -
Stsc211462g00013 375 PIRSF O-mtase 8 375 IPR016461 GO:0008168
Stsc211462g00013 375 FunFam Caffeic acid 3-O-methyltransferase 9 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211462g00013 Stsc-Chr211462 95112 97351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211462g00013 23 370 Monolignol Biosynthesis Gene Families AT5G54160 46.286 3.40e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211462g00013 - - aip:107621172 572.007