Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211461g00042 ATGTGTAAAGTCACTGGAAAAACCAACTTGACTTACGAAGAGGCTTTGGTGTCAGAAAAAAGTGCCTCTGAGAAAGTTCAACAGTTTCCAAAAGAATTAAGGGCTTCTGCTTTAAGGATTATTCAGTACAGTATGCTCCCATTGAAGGATCTAGCTGATTTCATTGCTGGAAAATTGGAGGAACGTTTGTTTGTGGGTGCTGAACTGCATGGGAAGAAGAACAATGAATTATACCCCTGCAGAATATTAAAAGTAATCCCGAAAGGAGTTAACAAATTCTGCTATGAGGTAGCTTGGCTTGACAAAGACAAGAATATAGGTGAAAAAGCAGAAGTCAATGCAGAAGATTTGGTACTAAAGAAACCATTATTCAGCAGAAATATGTTGAAGGCTTTTATCCGGGAATCCACATATAGGAATGCGCCTTGGGTTTTACATGAAGAAGTGGCAAAAAATCATAGAATTTCAACTGACATACCTGAGGAGTTAAGAGGAAGGGTTTTCTTAAAAAATGGACTTTTAACCTGCTCCAAGAAAAGAAAAACTGAGGAATCAATGGAAGGAACTGAAAACTGTAAAAGGAAGAAGTTGGATGGGGCAGAATTTGATGGTTCTACTGAAGAACAAGAAAATGGTCAGCACAAGGTTGAGCGAATCAAATATCCAATTGATGATTTGTTAGTGAAGCCTAGTCCACGTGATCCTGTATTGGCTACTCGTCCTTCTCCATCAAGAGACTTCAATGTCCCCATGAATTGTGTAGGAAATCTCTTAATGGTTTGGGATTTTTGTGCCACTTTTGGTAAAATGTTGCACTTGTTTCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCACAAGGACAGCAATGTTGTACTGCTTGTGGAGTCACATGCAGCTCTTTTTCGGGTTCTTATAAAAGATGAAAGCGAATACACTGAAGCTGTGAAAAAACGAAGGACAAAGTCCAAGATTACAATGGTTAACTGGACAGAATACCTATGTGATTTTCTAGAAATGATCAATATTCCTGGATTGCAGCAATATGAAGCAACCATAAAACGGGGACATTATGGCCTTGTAGATATCAATGGCAAATTAGAAATCCTATGTGAATTGATCAATCAAGTTATTGAAACGACAATTTTCAGAGAGAAGTTGGATGAGATTCTTGAACAGCGGCATGTGCTTGGGGCGTCTAGGAGGGAAGAAGCACTGGAAGATGCTAGGAAAAGAAGAGAAGAAAAAGTGATGTCGAAAGCTGAGTTAGAGAGCAATGAAGTTGTGAATGGACATCATGTGAACAGTGAAATTGTCTCATCCAACAGTGATGATGATATACAGAATGGAGACATCAGAAAGAAAAGAAACGGAGAAATAGAATCATCTAGCGACGACAATACAATTGGAAGTTTGATCAAGCATTCAAATCCTGCATCAAAGAAGATGCCTAAGTCTAAGAAGCCAAATTCAGAGTCGAAAGAACCAACGGAAAATGGAAAAGAATTACCAAAACAATTTAAGAGTGATAAGGATGCACCAGAGAAGAATAGTAAAGAACAGAGGGTGCTTCCTATCTCCTTGCTTAGATTGTTGTTGTCTTTTCTTTGA 1614 0.3841 MCKVTGKTNLTYEEALVSEKSASEKVQQFPKELRASALRIIQYSMLPLKDLADFIAGKLEERLFVGAELHGKKNNELYPCRILKVIPKGVNKFCYEVAWLDKDKNIGEKAEVNAEDLVLKKPLFSRNMLKAFIRESTYRNAPWVLHEEVAKNHRISTDIPEELRGRVFLKNGLLTCSKKRKTEESMEGTENCKRKKLDGAEFDGSTEEQENGQHKVERIKYPIDDLLVKPSPRDPVLATRPSPSRDFNVPMNCVGNLLMVWDFCATFGKMLHLFPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKDESEYTEAVKKRRTKSKITMVNWTEYLCDFLEMINIPGLQQYEATIKRGHYGLVDINGKLEILCELINQVIETTIFREKLDEILEQRHVLGASRREEALEDARKRREEKVMSKAELESNEVVNGHHVNSEIVSSNSDDDIQNGDIRKKRNGEIESSSDDNTIGSLIKHSNPASKKMPKSKKPNSESKEPTENGKELPKQFKSDKDAPEKNSKEQRVLPISLLRLLLSFL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211461g00042 537 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 2 68 IPR013136 -
Stsc211461g00042 537 Coils Coil 407 427 - -
Stsc211461g00042 537 MobiDBLite consensus disorder prediction 430 447 - -
Stsc211461g00042 537 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 521 - -
Stsc211461g00042 537 SMART testlast3 251 312 IPR018501 -
Stsc211461g00042 537 MobiDBLite consensus disorder prediction 448 463 - -
Stsc211461g00042 537 ProSiteProfiles WAC domain profile. 1 75 IPR013136 -
Stsc211461g00042 537 Pfam DDT domain 252 309 IPR018501 -
Stsc211461g00042 537 MobiDBLite consensus disorder prediction 414 524 - -
Stsc211461g00042 537 MobiDBLite consensus disorder prediction 486 520 - -
Stsc211461g00042 537 ProSiteProfiles DDT domain profile. 251 312 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211461g00042 Stsc-Chr211461 210566 214909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211461g00042 242 309 Homeobox Transcription Factor Family AT1G28420 42.647 4.14e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Stsc211461g00042 WAC_Acf1_DNA_bd 2.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211461g00042 - - gmx:100789956 715.687