Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211461g00040 ATGGGGTCTTCCATAATTCGCAGGAGAATCACCCGCTACCTCAACCACCACCCTTCTCTTCTTTTTGCTGCTTCTTGCTCTTTGAGTCACCGCCAACATGCGCTTGCTTCCAACCCTCTTTCATCATTTCTTCACACCCAACCTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGACTTCCATCTTACATGCGAGGAGCTGTGTATTGGGAACCCAACAAGCCTCTCACCATTGAAGAGTTCCACATACCTCGCCCCAAGGCCGGTGAACTCCTCATCAAAACCAAGGCTTGTGGAGTATGCCACTCTGATTTGCATGTTTTGAAAGGTGAAATCCCTTTCTCAATTCCTTGTGTTTTGGGTCATGAGATCACTGGTGAAGTTGTTGAACATGGACCTCTCACTGACCACAGAATTGCTGAAAGGCTTCCACTTGGATCTCGAGTTGTTGGCTCCTTCATCATGCCTTGTGGAAACTGCTCCTATTGTTCAAAGGGCCATGATGATCTCTGTGAAGATTTCTTTGCATATAACCGTGCGAAAGGAACTCTATATGATGGTGAAACTCGATTGTTTCTTAGAGGCAGTGGAAAACCAGTATATATGTATAGTATGGGAGGGCTTGCAGAGTACTGTGTTGTGCCAGCAAATGCATTATGTGTACTACCGGAAGCATTGCCATATAGCGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTATGGTGCTATGGCTCATGCAGCTGAGGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGGGGCGTTGGTTCTAGTTGTTTGCAGATAGCTCGAGCATTTGGTGCCTCGTATATAATTGCCGTGGATATTCAGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTATAAATTCAACAAAGGAAGATCCCATCCAAAAGATCATTGAAATTACCGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCTCAGACGTTTTCCCAATGCACACAGAGTGTGAAGGACGGAGGAAAAGCCGTGATGATTGGACTTGCACAAGCTGGTTCTGTGGGTGAGATGGATATAAACCGGCTTGTTCGTAGAAAGATACAAATTATAGGGTCGTATGGAGGGAGAGCTAGGCAAGATCTTCCAAAGTTAATGAGATTAGCAGAAACAGGAATATTCAATCTTGAGCATGCTGTTTCCAGAAGATACACCTTTGAGGAGGCAGCCAAAGCATTCCAAGACCTCAACCAAGGAAACATTATTGGTCGAGCTATCATCGATATAAACTAG 1305 0.4559 MGSSIIRRRITRYLNHHPSLLFAASCSLSHRQHALASNPLSSFLHTQPGGGGGGGGGGLPSYMRGAVYWEPNKPLTIEEFHIPRPKAGELLIKTKACGVCHSDLHVLKGEIPFSIPCVLGHEITGEVVEHGPLTDHRIAERLPLGSRVVGSFIMPCGNCSYCSKGHDDLCEDFFAYNRAKGTLYDGETRLFLRGSGKPVYMYSMGGLAEYCVVPANALCVLPEALPYSESAILGCAVFTAYGAMAHAAEVRPGDSVAVIGTGGVGSSCLQIARAFGASYIIAVDIQDEKLQKAKTFGATHTINSTKEDPIQKIIEITGGKGVDVAVEALGKPQTFSQCTQSVKDGGKAVMIGLAQAGSVGEMDINRLVRRKIQIIGSYGGRARQDLPKLMRLAETGIFNLEHAVSRRYTFEEAAKAFQDLNQGNIIGRAIIDIN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211461g00040 434 CDD Zn_ADH10 63 432 - -
Stsc211461g00040 434 Pfam Alcohol dehydrogenase GroES-like domain 88 219 IPR013154 -
Stsc211461g00040 434 FunFam Alcohol dehydrogenase (Zinc) 67 253 - -
Stsc211461g00040 434 Pfam Zinc-binding dehydrogenase 263 394 IPR013149 -
Stsc211461g00040 434 SMART PKS_ER_names_mod 70 431 IPR020843 GO:0016491
Stsc211461g00040 434 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 225 398 IPR036291 -
Stsc211461g00040 434 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 62 431 - -
Stsc211461g00040 434 Gene3D - 240 377 - -
Stsc211461g00040 434 FunFam Sorbitol dehydrogenase 240 378 - -
Stsc211461g00040 434 Gene3D - 67 423 - -
Stsc211461g00040 434 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Stsc211461g00040 434 SUPERFAMILY GroES-like 59 266 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211461g00040 Stsc-Chr211461 206930 210183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211461g00040 80 355 Monolignol Biosynthesis Gene Families AT4G37970 29.181 1.90e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211461g00040 - - gmx:100775182 703.745