Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211461g00032 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGAGCTTGGACCAAAGAGGAAGATGAGCGCCTCATCAACTACATCAAGCTTCATGGCGAAGGCTGTTGGAGATCCCTTCCCAAAGCTGCAGGGTTGCTTAGGTGTGGAAAGAGTTGCAGGCTGAGATGGATAAATTACCTAAGGCCTGATCTCAAGAGAGGCAACTTCACTGACGAAGAAGACGAACTCATCATCAACCTCCACAGCTTACTCGGTAACAAATGGTCTCTAATAGCTGCAAGGTTACCAGGAAGAACAGATAATGAGATAAAGAACTACTGGAACACCCACATAAAGCGCAAACTCTATAGCCGTGGAATTGACCCTCAAACCCATCAGCCACTCAACGCACCATCTACCAAAACAATATCACCAACACTTTCTTCTTCACCCGCTAATAATAATAATACTCCACCGCCATCAGTACCTACCACCACCAACAACGACAATAACAACAGCATCAATTTTCGGCTATTTGGTGTTGCTTGTGCCAACAACAATACAGACCACTCATCAGGAGGAGGAGGCGGTGATGAAGATTCAAACACCAGCAGTGGCGTCACCACCGAGTTAGAACCATATCCTAATCTCAACTTGGACCTCTCCTTAGGCCTGCTTCCCTCTCCTATCATTTCCTCAATAATCCACACAGAAAAGGAAAAGGCTAAACCACACCGTCATCAACAAGGTGGTTATTTCTCGTGTGTGTGTCAAAGTCTAGGGTTTCAAAAGAGAAATAACAACAACCAACCTTGTGCCTGCAAAGCCAAGCCTGGTGCCGGTACCGGTGGCGCTGCTGCTTCCATTAATAATAACATTATTGACAGTCAGCAAGCTAAGGACGACCAGTAG 894 0.4586 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHQPLNAPSTKTISPTLSSSPANNNNTPPPSVPTTTNNDNNNSINFRLFGVACANNNTDHSSGGGGGDEDSNTSSGVTTELEPYPNLNLDLSLGLLPSPIISSIIHTEKEKAKPHRHQQGGYFSCVCQSLGFQKRNNNNQPCACKAKPGAGTGGAAASINNNIIDSQQAKDDQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211461g00032 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc211461g00032 297 CDD SANT 69 112 IPR001005 -
Stsc211461g00032 297 SMART sant 13 63 IPR001005 -
Stsc211461g00032 297 SMART sant 66 114 IPR001005 -
Stsc211461g00032 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc211461g00032 297 CDD SANT 16 61 IPR001005 -
Stsc211461g00032 297 FunFam Myb transcription factor 68 137 - -
Stsc211461g00032 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc211461g00032 297 MobiDBLite consensus disorder prediction 123 165 - -
Stsc211461g00032 297 FunFam MYB-related transcription factor 13 66 - -
Stsc211461g00032 297 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 220 - -
Stsc211461g00032 297 Gene3D - 69 139 - -
Stsc211461g00032 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc211461g00032 297 Gene3D - 14 66 - -
Stsc211461g00032 297 MobiDBLite consensus disorder prediction 121 165 - -
Stsc211461g00032 297 MobiDBLite consensus disorder prediction 181 205 - -
Stsc211461g00032 297 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc211461g00032 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc211461g00032 297 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211461g00032 Stsc-Chr211461 167432 168738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211461g00032 1 219 MYB Transcription Factor Family AT4G38620 60.444 7.04e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211461g00032 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211461g00032 K09422 - gmx:778033 310.457