Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211461g00028 ATGTCAGCGGCAGCGTCGAAGCCAGCGTGGGTGCTCCCACACCGAACCCCAAGGCTAACGGAGCTCTACACGCTCGGAAGAAAACTGGGTCAGGGTCAATTCGGAACCACCTTCCTCTGCACGGAAAAGTCGACGGCCCGCACCTTCGCCTGCAAGTCCATCCCAAAGCGCAAGCTCTTCTGCAAGGAAGACTACGACGACGTTTGGAGAGAGATTCAGATAATGCACCATCTTTCGGAGCACCCCAACGTGGTCAGAATCCATGGCACCTACGAGGACAACCTCGCCGTTCATCTCGTCATGGAGCTCTGTGAAGGCGGCGAGCTCTTTGATAGGATCGTGCACAAGGGTCACTACAGTGAGAGGCAAGCTGCTAAGCTTATCAAGACCATTGTTGAGGTTGTTGAATCTTGCCACTCTCTTGGGGTCATGCATAGGGACCTCAAGCCTGAGAATTTCTTGTTCGATAGCGTTGACGAAGATGCTAAGCTCAAAGCCACTGATTTTGGCTTGTCTGTCTTCTATAAGCCTGGTGAATCCTTTTGTGATGTTGTTGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTTTATGGACCCGAATCAGATGTGTGGAGTGCAGGGGTTATTTTGTACATCTTATTAAGCGGGGTGCCACCGTTTTGGGCTGAAACTGAACCGGGGATCTTCCGGCAGATTTTACTAGGAAGAATTGATTTTCAGTCTGAGCCTTGGCCTAGCATTTCGGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCGAAAACGAGGCTCACAGCACATGAAGTACTTCGCCACCCATGGATTGTTGATGACAACATTGCACCAGATAAACCTCTTGATTCTGCAGTTTTGTCTAGACTGAAGCAATTCTCTGCAATGAATAAACTGAAAAAGATGGCTTTGCGTGTTATTGCCGAGCGACTTTCTGAGGAAGAAATTGGCGGTCTGAAAGAGTTATTCAAGATGATTGACACAGACAGCAGCGGAACCATAACATTTGATGAGTTAAAGGAAGGCTTAAAGCGAGTAGGATCCGATCTTATGGAGTCTGAAATCAAGGATCTGATGGATGCACTGGAGAGAGAGGAAAACCTTTTGTCAGCATTCTCCTATTTTGACAAAGATGGTAGTGGCTACATAACCATTGATGAGATTCAACAAGCTTGTAAGGACTTCGGTTTAGATGATGTACATATTGATGACATGATCAAGGAAATAGATCAAGACAATGATGGACAAATAGATTATGGGGAATTTGCTGCTATGATGAGAAAGGGGAATGGAGGGATAGGAAGGAGAACCATGAGAAAAACACTCAATTTAAGAGATGCTTTTGGATTAGTAAGCAATGGAGCCAATCAAGTTATTGATGGTCACCTTTAG 1422 0.462 MSAAASKPAWVLPHRTPRLTELYTLGRKLGQGQFGTTFLCTEKSTARTFACKSIPKRKLFCKEDYDDVWREIQIMHHLSEHPNVVRIHGTYEDNLAVHLVMELCEGGELFDRIVHKGHYSERQAAKLIKTIVEVVESCHSLGVMHRDLKPENFLFDSVDEDAKLKATDFGLSVFYKPGESFCDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILLGRIDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGTITFDELKEGLKRVGSDLMESEIKDLMDALEREENLLSAFSYFDKDGSGYITIDEIQQACKDFGLDDVHIDDMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRKTLNLRDAFGLVSNGANQVIDGHL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211461g00028 473 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Stsc211461g00028 473 Gene3D - 297 372 - -
Stsc211461g00028 473 Gene3D - 373 473 - -
Stsc211461g00028 473 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Stsc211461g00028 473 Pfam EF hand 329 355 IPR002048 GO:0005509
Stsc211461g00028 473 Pfam EF-hand domain pair 376 437 IPR002048 GO:0005509
Stsc211461g00028 473 Gene3D - 307 321 - -
Stsc211461g00028 473 CDD EFh 378 437 IPR002048 GO:0005509
Stsc211461g00028 473 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211461g00028 473 Pfam Protein kinase domain 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211461g00028 473 ProSiteProfiles EF-hand calcium-binding domain profile. 411 442 IPR002048 GO:0005509
Stsc211461g00028 473 FunFam Calcium-dependent protein kinase SK5 371 466 - -
Stsc211461g00028 473 CDD EFh 329 401 IPR002048 GO:0005509
Stsc211461g00028 473 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Stsc211461g00028 473 Coils Coil 358 378 - -
Stsc211461g00028 473 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Stsc211461g00028 473 ProSiteProfiles EF-hand calcium-binding domain profile. 324 359 IPR002048 GO:0005509
Stsc211461g00028 473 Gene3D Transferase(Phosphotransferase) domain 1 109 295 - -
Stsc211461g00028 473 Gene3D Phosphorylase Kinase; domain 1 25 108 - -
Stsc211461g00028 473 CDD STKc_CAMK 23 280 - -
Stsc211461g00028 473 FunFam Calcium-dependent protein kinase 1 25 108 - -
Stsc211461g00028 473 SUPERFAMILY Protein kinase-like (PK-like) 20 293 IPR011009 -
Stsc211461g00028 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Stsc211461g00028 473 SMART efh_1 377 405 IPR002048 GO:0005509
Stsc211461g00028 473 SMART efh_1 411 439 IPR002048 GO:0005509
Stsc211461g00028 473 SMART efh_1 328 356 IPR002048 GO:0005509
Stsc211461g00028 473 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Stsc211461g00028 473 SUPERFAMILY EF-hand 320 438 IPR011992 -
Stsc211461g00028 473 SMART serkin_6 23 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211461g00028 473 FunFam Calcium-dependent protein kinase SK5 109 293 - -
Stsc211461g00028 473 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211461g00028 Stsc-Chr211461 148381 152052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211461g00028 11 460 EF-hand Containing Proteins AT1G35670 75.420 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc211461g00028 Pkinase 2.9e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211461g00028 K13412 - gmx:547825 858.211