Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211460g00024 ATGGCTGTTGTAACAGAACAAGATATGAAATGGAGGAGAGAGAGAAGCAAGTTGAGGCAGCAGCAGAAAGGTGATCCAATTCCAATTCCAAGGCCACAAGTCCCTTCCATGATCCAAAACACAAGCTGCAAATCCACCATATCTTCTCTCATCCTCTCTTCTTTCTCCAATGAAACCACATCAAACAAGAACAAGAGCATCACATTCAGGGGACTTGGTTGCACTGCAGCTTCTGCATCATCACAACAAGTCTCAGTTCCTGCTGTGATTCGTTCCTCTGCTGATTGGCATCATCCCAACAACAACAGTAGGAAGAAGAACAAGTGCAAAAGGAGGAACACTGAGAAAAGCAGCATAACATGTCACCATAAACATGCTGCTTCTTCTTCTTCTTCTTTTCAGGATGTATGGTGTGGCCCTGGAATTGGATTCTCTTCTGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAGAATGCCTCTGCCTCTTCAAGAAGGAACCTTGATGCTGTGGACAGACCAACACATAGAGAAGAGCGTCCTCCGCCTTATTTGGGAAGGCGCACCGGCACCATGAACACAGGACTCTCTTTCTTGGATGATGATCAAGGCATTTTCGCGGCACGCCCCGGATCGGAGCCTTTCCCCGCCGGTAGATACTTTCGCCACGTTCCACATCCCTCCTCTGATGATGGTCTCGCTGAGATTATGATACTTCAAGGAAGATTATTAATGGGTGGAAGATTACATTCACATGATCAATTTAGAGACTGGAGACTCGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTGGGTGAGAGAATTGGCCATGTGAACACTGGACTTAAAGAAGATGAGATGGGACACAATGTAAGGAAAATTAAGCATATAATTTCAAACAATAATTCAAAGCATCAAACAGACAAAAATTGCAGCATTTGTCAGGAGGAGTATGAAGCTGATGATGAAATTGGGAGGCTAAATTGTGAACACAAGTATCACTTTCAGTGTATAAAACAATGGCTTGTCCATAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTAGTTCGACACTGA 1092 0.4377 MAVVTEQDMKWRRERSKLRQQQKGDPIPIPRPQVPSMIQNTSCKSTISSLILSSFSNETTSNKNKSITFRGLGCTAASASSQQVSVPAVIRSSADWHHPNNNSRKKNKCKRRNTEKSSITCHHKHAASSSSSFQDVWCGPGIGFSSDHASASVDCVVARKNASASSRRNLDAVDRPTHREERPPPYLGRRTGTMNTGLSFLDDDQGIFAARPGSEPFPAGRYFRHVPHPSSDDGLAEIMILQGRLLMGGRLHSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGHNVRKIKHIISNNNSKHQTDKNCSICQEEYEADDEIGRLNCEHKYHFQCIKQWLVHKNFCPVCKQEVVVRH 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211460g00024 363 SUPERFAMILY RING/U-box 304 361 - -
Stsc211460g00024 363 MobiDBLite consensus disorder prediction 7 21 - -
Stsc211460g00024 363 MobiDBLite consensus disorder prediction 165 192 - -
Stsc211460g00024 363 FunFam E3 ubiquitin-protein ligase rnf12-A 282 361 - -
Stsc211460g00024 363 ProSiteProfiles Zinc finger RING-type profile. 315 356 IPR001841 -
Stsc211460g00024 363 SMART ring_2 315 355 IPR001841 -
Stsc211460g00024 363 Pfam Ring finger domain 314 356 IPR001841 -
Stsc211460g00024 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 49 359 IPR045191 GO:0061630
Stsc211460g00024 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 362 IPR013083 -
Stsc211460g00024 363 MobiDBLite consensus disorder prediction 91 125 - -
Stsc211460g00024 363 MobiDBLite consensus disorder prediction 171 186 - -
Stsc211460g00024 363 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211460g00024 Stsc-Chr211460 272388 274868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211460g00024 7 270 C3H Transcription Factor Family AT1G73760 39.437 6.14e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211460g00024 - - ahf:112751066 499.59