Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211459g00016 ATGGCTCCTCCTTCTTCTTCTTCTGATATCAACCATCTTTCACACCCTTGCATATATGGGGATTTTGTTTCATCATATTCAGAGAGAAAGTCTGGTTTGATGAAATGGTTTGGTAAGATATTCAAAATTGGATCATCAAGTAGAGGAAGGAGTGATAGCAGTAGTGGTCGTCATCTACAGCAGCCTGCAGAGGAAAACATGGTTTGGAGAGCACCATCTAGATCATTGGATGACCGTGCTAGATCCCGGAAGGATGAAGAGGATTTGAACCGAGCAATTGCACTTTCTTTAGGTGAAAATTTCAAGAGACCAAATGGTTATAGATGGCACACAGGCAGTGATGATATTGATCGGATGCACTCATCTTCACATCCTCCATATGCACCTGCACCTTTATATCCCAGAGGATACAGTTTGGCAAATGTAAGAATATGTGGAGGGTGCAATCAGGAGATTCTATATGGAAATTGTTTGGGATGGATGGATACTTATTTTCATCCGGATTGCTTCCGGTGTCACTCGTGCCGCCACCCCATTACTGAACGCGAGTTTTCTTTGTCAGGGAGCCGTCCATATCACAAGACTTGTTTTAAAGAGTTAACCCACCCTAAGTGTGAAGTTTGCCATCAATATATTCCTATAAATGCAGCTGGTTTGATTGAGTATAGGTGCCACCCATATTGGTACCAAAAGTATTGTCCATCACATGAGTATGATAATACAGCTCGCTGTTGTAGTTGTGAAAGATTAGAGTCGCGGAACGAAAAGTATTATAGACTTGACGATGGACGGATTTTGTGCTTCGAGTGCATGGAGTCTGCTATAACGGATACCGGCGAATGCCAGCCTCTATACCATGCCATCAGAGATTATTATGAAGGGATGAACATGAGAATAGATCAGCAAGTTCCTATGCTTCTTGTGGGGAGAGATGCACTTAATGAAGCTATTGTTGGGGAGAAGAATGGTTTCCATCATTTGCCTGAGACAAGGGGCTTGTGCCTCTCAGAAGAGCAAACTGTCACCAGTGTACATAGATGGCCTAGAATGGGAGGGCATAGATTCATAGGGATGAGAACTCAACATCAAAAGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTTTATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTAGCCCATGAGTTGATGCATGCTTGGTTAAGACTTAAAGGTTACCGGAACCTCGAAGCGGAAGTAGAGGAAGGTATTTGTCAGGTTCTATCATACATGTGGCTTGAATCAGAAGTGATGCCAGGGTCTAGTAGGTACATGGCATCAACATCATCAGCATCTTCATCTTCTTCTTCTTCTTCTTCTTCATACTCCACATCATCATCATCAAAGAAAGGAGCAAGGTCTCAAGTGGAGAACAAGCTAGGAGAGTTTTTCATGAACCAGATAGCCAATGATTCTTCACCAGCATATGGAGGTGGGTTCAGGTCTGCAATTGAAGCAGTTAATAAGTATGGTTTGCGTTGTACCTTGGACCATATTCGTTTGACTGGTCATTTCCCACTGTAA 1554 0.4273 MAPPSSSSDINHLSHPCIYGDFVSSYSERKSGLMKWFGKIFKIGSSSRGRSDSSSGRHLQQPAEENMVWRAPSRSLDDRARSRKDEEDLNRAIALSLGENFKRPNGYRWHTGSDDIDRMHSSSHPPYAPAPLYPRGYSLANVRICGGCNQEILYGNCLGWMDTYFHPDCFRCHSCRHPITEREFSLSGSRPYHKTCFKELTHPKCEVCHQYIPINAAGLIEYRCHPYWYQKYCPSHEYDNTARCCSCERLESRNEKYYRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGRDALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWPRMGGHRFIGMRTQHQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLEAEVEEGICQVLSYMWLESEVMPGSSRYMASTSSASSSSSSSSSSYSTSSSSKKGARSQVENKLGEFFMNQIANDSSPAYGGGFRSAIEAVNKYGLRCTLDHIRLTGHFPL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211459g00016 517 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Stsc211459g00016 517 SMART lim_4 144 196 IPR001781 -
Stsc211459g00016 517 CDD LIM_DA1 145 197 - -
Stsc211459g00016 517 Coils Coil 517 517 - -
Stsc211459g00016 517 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Stsc211459g00016 517 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 170 - -
Stsc211459g00016 517 Gene3D Cysteine Rich Protein 135 202 - -
Stsc211459g00016 517 MobiDBLite consensus disorder prediction 434 461 - -
Stsc211459g00016 517 FunFam Protein DA1-related 2 133 198 - -
Stsc211459g00016 517 MobiDBLite consensus disorder prediction 46 61 - -
Stsc211459g00016 517 PANTHER PROTEIN DA1-RELATED 2 36 516 IPR045218 -
Stsc211459g00016 517 MobiDBLite consensus disorder prediction 45 67 - -
Stsc211459g00016 517 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 228 - -
Stsc211459g00016 517 Pfam Protein DA1 294 512 IPR022087 -
Stsc211459g00016 517 Pfam LIM domain 145 198 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211459g00016 Stsc-Chr211459 110211 113162 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc211459g00016 DA1-like 5.6e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211459g00016 - - gmx:100798829 861.677