Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211458g00044 ATGATGAAACCACTTTCCTCCTCCACCATCCTCCGTATCTCCGCCGCCGTGATACTCACGCTTTCTTTGCTGATCCCCAGCTCCCATGCTCTCGGCTCCGGCGCCACCCTCGCCGTCACCGACGTCTCCGCCACCGTATGCGGCGTCGTCGCCGGAGAATCCACCCACCGTATTGAGTGCTCACGTCTCGGAAGCCAGCTTGTCCCCGCCGTTCCTCCTAACATCTCATTCTCCACACTCTCCGGCGGCGCCACCTTCTTCTGCGGCCTCAGGTCCGGCAACGGCGCCTTGCTCTGTTGGAACACCACCACCACCACCAACGGAACCTTCACGCCTAAGAGACTCTACTACAACGATACTGTTCTATTGGAGAATCTCGCCGTCGGAGAAACCCACGTTTGCGCCACCGTGGTCGGCGCCGGAACCGTTACGTGCTGGAGAACCAGCAAAACGTTCAAACTCCCATCTGGGTCTCTTGAATTCTCTTCAATCTCATCTGGGTCAGGATTCTCTTGTGGGATTCTGAAGAATAATAAGAATAGTTCTCAAGTTCGGTGTTGGGGTGAAACGGTAATTTCCACAAAGATTGAGAATGGGTTTAAGAACATGTCTATGTGGAGCATTGTCGCAGGTGGTTCACAAGTTTGTGGGTTGAATTCAACTGGGTTTCTGGTTTGCATAGGGAACAACAACAGTGTTGGGCAACTTGATGTTCCAAAGCATGAAGCTTGGGAGTTTGGTGAATTAGCAGTTGGTGGTAGCCATGGATGTGCTTTGAGAAGGTTGAATGGTAGTGTTGTTTGTTGGGGTGGTAATGGTAATTTCAACGTGCAAGTAACAAAAGATGTTTCCTTTGAGGTAATTGTTTCTGGGTCTAACTTCACTTGTGGATTAGTGACACGTAATCTCACTGTTCTTTGTTGGGGTCCTGGTTGGCCTAATAATGATAATAATAACGGTTCAAGATTTGAACTTCCATTGCCTAGTGTTCTTCCGGGTCCTTGTGTTCAATCCTCTTGTGATACTTGTGGTACATATCCTGATTCTCAAGCTCTCTGTTCTGCTTCTGATAGCAACATTTGCAAGCCTTGTTGGCCTGCAATTCGAGCTCCACCGCCGGCGATAGTTCCATCTTCGCCGCCTCCGGGGCTTGCTCCTCCGCCGAGGTCGCGGTCAAAGGGATTGACTAGGGGTTTATTGGCATTTGCTATAGTTGGATCAGTTGGTGCTGTGGCTGGTATTTGCACAATTGTATATTGCTTGTGGAATGGGGTTTGTTTTGGGAAGAAGAAAGTGCACAATTCTGTGCAGCCAACAATCACAAGAGGTAGCAGCACTTCAAGTGGTGTTTCCAACAATAGTAGGAACAATAGCAGGCCTCTCTCCAGGACATCGACCATTATGCGGCAAGGCTCGAGGATAATGCGGCGCCAGAGGAGTGGCACCTCATCCTCAAAACACCCTGATAGGGCAGAGGAATTCACCTTGGCCGAGCTAATAGCTGCGACGGACAGTTTCTCGCCCGGGAACAAGATTGGGGCAGGAAGCTTTGGAGTTGTGTACAGGGGAAAACTTGTGGACGGCCGCGAGGTGGCGATCAAGAGAGGCGAAATTGGCTCAAAATTGAAGAAGTTTCAAGAGAAGGAGAGCGCGTTTCAGTCCGAATTGTCCTTCTTGTCGCGGCTACACCACAAGCACTTGGTTAGGCTAGTTGGTTTCTGTGAGGAGAAAGAGGAGAGGCTCTTGGTTTATGATTACATGAAGAATGGTGCATTGTATGATCATTTGCATGCTAAGAACAATGTGGAGAAGAGTAGCAGTGTCTTGAATTCATGGAAAATGAGGATCAAAATCGCCTTGGACGCCTCCCGAGGGATCGAGTATCTGCACAATTATGCGGTTCCATCGATAATTCATAGGGATATCAAGTCTTCCAACATCCTCCTCGACGCGAATTGGACTGCTAGAGTATCCGATTTTGGATTGTCATTGATGAGTCCAGAGCCAGACCGTGATCATCGGCCGATGAAGGCAGCCGGAACGGTTGGATACATTGATCCGGAATACTATGGCCTAAATGTGATCACGGCAAAGAGTGATGTCTACGGCTTCGGAGTGGTTCTTTTAGAGCTATTAACCGGAAAGCGAGCCATATTCAAGAACGGTGAAGATGGCGAGACGCCAACGAGTGTGGTGGATTATGCAGTGCCTGCAATTTTGAGTGAGGAATTGATGAAGATTTTGGACCCTAGAGTTGGAACCCCAGAGGCAAATGAAGGTGAGGCAGTGGAATTGATGGCACAAATTGCAATGCTTTGTGTGAATTTGGAAGGAAAAGATAGACCAACAATTTCAGATATTGTTACAAATTTAGATCGTGCTTTGCTTCTTTGTGAAGGTTCTCATCATCATGAGAGCAATTCCAGTGGTATAATCTCCATTGTTTCCGATTGA 2454 0.4845 MMKPLSSSTILRISAAVILTLSLLIPSSHALGSGATLAVTDVSATVCGVVAGESTHRIECSRLGSQLVPAVPPNISFSTLSGGATFFCGLRSGNGALLCWNTTTTTNGTFTPKRLYYNDTVLLENLAVGETHVCATVVGAGTVTCWRTSKTFKLPSGSLEFSSISSGSGFSCGILKNNKNSSQVRCWGETVISTKIENGFKNMSMWSIVAGGSQVCGLNSTGFLVCIGNNNSVGQLDVPKHEAWEFGELAVGGSHGCALRRLNGSVVCWGGNGNFNVQVTKDVSFEVIVSGSNFTCGLVTRNLTVLCWGPGWPNNDNNNGSRFELPLPSVLPGPCVQSSCDTCGTYPDSQALCSASDSNICKPCWPAIRAPPPAIVPSSPPPGLAPPPRSRSKGLTRGLLAFAIVGSVGAVAGICTIVYCLWNGVCFGKKKVHNSVQPTITRGSSTSSGVSNNSRNNSRPLSRTSTIMRQGSRIMRRQRSGTSSSKHPDRAEEFTLAELIAATDSFSPGNKIGAGSFGVVYRGKLVDGREVAIKRGEIGSKLKKFQEKESAFQSELSFLSRLHHKHLVRLVGFCEEKEERLLVYDYMKNGALYDHLHAKNNVEKSSSVLNSWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILLDANWTARVSDFGLSLMSPEPDRDHRPMKAAGTVGYIDPEYYGLNVITAKSDVYGFGVVLLELLTGKRAIFKNGEDGETPTSVVDYAVPAILSEELMKILDPRVGTPEANEGEAVELMAQIAMLCVNLEGKDRPTISDIVTNLDRALLLCEGSHHHESNSSGIISIVSD 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211458g00044 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Stsc211458g00044 817 Gene3D Phosphorylase Kinase; domain 1 467 586 - -
Stsc211458g00044 817 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 201 802 IPR044815 GO:0004674
Stsc211458g00044 817 SUPERFAMILY RCC1/BLIP-II 68 311 IPR009091 -
Stsc211458g00044 817 SUPERFAMILY Protein kinase-like (PK-like) 483 791 IPR011009 -
Stsc211458g00044 817 MobiDBLite consensus disorder prediction 438 464 - -
Stsc211458g00044 817 Gene3D Transferase(Phosphotransferase) domain 1 587 808 - -
Stsc211458g00044 817 Pfam Protein kinase domain 509 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211458g00044 817 FunFam receptor-like protein kinase FERONIA 469 586 - -
Stsc211458g00044 817 FunFam Serine/threonine-protein kinase-like protein CCR4 587 810 - -
Stsc211458g00044 817 ProSitePatterns Protein kinases ATP-binding region signature. 512 534 IPR017441 GO:0005524
Stsc211458g00044 817 SMART serkin_6 506 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211458g00044 817 ProSiteProfiles Protein kinase domain profile. 506 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211458g00044 817 CDD STKc_IRAK 512 793 - -
Stsc211458g00044 817 Gene3D - 26 203 IPR009091 -
Stsc211458g00044 817 Gene3D - 204 365 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211458g00044 Stsc-Chr211458 307683 310269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211458g00044 1 817 Receptor kinase-like Gene Family AT3G55950 57.669 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc211458g00044 Pkinase 4.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211458g00044 - - gmx:100786639 1075.85