Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211458g00042 ATGTGTAGAACACTAAACACAAAACAGGAAAACAGAACACCATTAAACAAACACCACAACACACCGATCTGGTGGCTGAGATCGGAAAAAATGAAGTCATCAATCCACCACCACCAACACCCTCCTTTGCAGCAGCAGCAGCCGCCGCCGCCGCCACTCTCCGACTCCGACACCGACTCCGACGGAAGCGGAACCCACTCCTCCTCCTCCGATCTCCTCCGCCATTCCGACCTCTCCGCCTCCATCTTCAAACCCTACTTCGAGTTCACCGGGCGCCACTCTTCTTCGGCGACCACCGCCACCCCCGCCGAAGTGTCAAAGATCCAGTCCTTCCTGACCTCCTCATCCTCCGGCGCACTCTCATGCCTCATCTGCCTCGAACGCATCAAACCCTCAGACCCAACTTGGTCCTGCTCTTCTCTATGCTTCGCACTCTTCCACCTCCATTGTATCCAATCATGGGCCCGCCAAGCCTCCAATCTCGCTGCTGCACGCGCCGCCACGCGTCTCCCCATCACACAGCAGCGCGCCTCTGAAACCGCGCTCTGGAACTGCCCCAAATGCAGGGTAGAGTACCCAATTACTCACATTCCAAAAACCTACTTTTGCTTCTGCGGAAAACTCGAGAACCCTCCCAATGATCCATGGGTTTTGCCTCATTCTTGCGGTGAGATTTGTGGGAGGCCATTGAAGCACAATTGTGGCCACCATTGCCTTCTTTTATGCCACCCGGGACCCTGCCCGTCCTGCCCGAAACTCGTCAAAGTTCGTTGCTTTTGTTCCAAAATTGAAGATGTGAGGAGGTGCGGGTTCAAGGAATTTTCGTGTGGGAAAGTTTGTGGGAAGGTTTTGGATTGTGGGGTTCATGGTTGTGCTGAGACTTGTCATGAGGGGGAATGCCCTCCCTGCCGGGCACGCAGTGTGTACCGGTGCCGGTGTGGGAAGAAGAAGGAAGAGAGGGAGTGCTGTGACCGTGATTTCGGGTGTGGCGAGCCATGTGAGAAGAGGCTTGGATGTGGGAAGCATGTGTGTGAGAGAGGGTGCCATGTTGGGGAGTGTGGAGATTGCCCCATGCAAGGGAAGAGGACATGTCCTTGTGGGAAGAGAGTGTATGAAGGGATGCCTTGTGATGTTCTTGTGCCCTTGTGTGGGGCTACTTGTGATAAGATGCTTAGTTGTGGGTACCATAGGTGCCCCGAGAGGTGCCACCGTGGCGCGTGTGCCGAGACTTGTAGGACTGTTGTGAAGAAGTCCTGTCGCAGCCTCCGGAAAGATGTTCCTTGCTATCAAGATTTGTGGTGTGAAAGGAAGTGCCAGAGGATGCGGGACTGTGGCCGCCATGCTTGTAAACGCAAGTGCTGTGATGGGGATTGCCCTCCGTGCTCAGAGGTTTGTGACAAGAGGCTTAGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGGGGTGCCTGTGCTCCTTGCCCAATAATGGTCACGATTGCATGTGCGTGTGGGGAAACACATTTTGAGGTTCCTTGCGGTACTGAAATGGAACAAAAACCACCCAAGTGTCCTAAACCCTGTCCTATTGCTCCTTTATGCCGTCATGCACCAAGGCTCAAGCCACACAAATGCCATTATGGAGCTTGCCCTCCTTGTCTGCTACCTTGTGCAGAAGAGTACTCATGTGGCCATGCTTGCAAATTAAGGTGTCATGGTGCTAAACCTCCGCCTAATCGAGAGTTTACTCTCAAACCAAAGAAAAAGAAAATTATACAACAAAGTGAATGTACACCTGGCACTCCATGCCCTCCTTGCCCTGAACTAGTGTGGAGACCATGTGTCGGGCAACACATTGGAGCCGAGCGAATGATGGTCTGCTCTGATAAATCACAGTTTGCCTGTGAAAATTTATGTGGAAATCCTCTTCCATGTGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGGAGAATCCGTCCTCCATGAACCGGCTACCTCAAATTGAACCTTGTGAAGTTTGTTCTCTTCCATGCGATAAGGAAAGAGAACCTAAATGTCAGCATCGTTGCCCTCGGCGATGCCATCCTGGAGACTGCCCTCCATGCAAAGTGCTGATCAAGCGGTCTTGTCATTGTGGCTCGATGGTCCATGTGTTTGAGTGCATATATTACAACACCTTGTCGGCTAAGGATCAAGAGAAAGTCCGTTCTTGTGGTGGGCTGTGTCATAGGAAGTTACCAAATTGTACCCATCTATGTCCCGAGACGTGCCATCCTGGTGAATGCCCGAATCCTGAGAAATGCAGTAAAAAGGTCACCGTTCGTTGCAAATGCCAAACACTGAAAAAGGAGTGGCCATGTCACGATGTTCAAGCAGCATATCATGCTGCTGGTTCCCACCCGAAGGATATTACAAAAAATCAATTTGGAATTGGTCTTATTCCTTGCAATTCTGATTGCAAGAGTAAAATGCAGGTTGTTGAGACAGAACTACATTTACGTAAATCTCAAGTTACGGAGGTAAAAGAGACAGATAACGAAAAGTCTGCTCCGAAGCGACGAAAAAGGCAGAAACGGGTACAAGAATCCAAGGAAACAACAAAACTACAGAAAATTATTTCCACAACAAAGCAGCTCCTTCTATACCTTTTTATTTTGATCATACTTGTTGCTGCTACATATTATGGATACAAGGGACTTCTATGGCTCAATGATTGGATGAATAAAGTTGATGAACAAAGACAAAGACATCCTAGAAGGATCAGATGA 2754 0.4967 MCRTLNTKQENRTPLNKHHNTPIWWLRSEKMKSSIHHHQHPPLQQQQPPPPPLSDSDTDSDGSGTHSSSSDLLRHSDLSASIFKPYFEFTGRHSSSATTATPAEVSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCSSLCFALFHLHCIQSWARQASNLAAARAATRLPITQQRASETALWNCPKCRVEYPITHIPKTYFCFCGKLENPPNDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCSKIEDVRRCGFKEFSCGKVCGKVLDCGVHGCAETCHEGECPPCRARSVYRCRCGKKKEERECCDRDFGCGEPCEKRLGCGKHVCERGCHVGECGDCPMQGKRTCPCGKRVYEGMPCDVLVPLCGATCDKMLSCGYHRCPERCHRGACAETCRTVVKKSCRSLRKDVPCYQDLWCERKCQRMRDCGRHACKRKCCDGDCPPCSEVCDKRLRCKNHKCPSPCHRGACAPCPIMVTIACACGETHFEVPCGTEMEQKPPKCPKPCPIAPLCRHAPRLKPHKCHYGACPPCLLPCAEEYSCGHACKLRCHGAKPPPNREFTLKPKKKKIIQQSECTPGTPCPPCPELVWRPCVGQHIGAERMMVCSDKSQFACENLCGNPLPCGNHYCTKTCHALENPSSMNRLPQIEPCEVCSLPCDKEREPKCQHRCPRRCHPGDCPPCKVLIKRSCHCGSMVHVFECIYYNTLSAKDQEKVRSCGGLCHRKLPNCTHLCPETCHPGECPNPEKCSKKVTVRCKCQTLKKEWPCHDVQAAYHAAGSHPKDITKNQFGIGLIPCNSDCKSKMQVVETELHLRKSQVTEVKETDNEKSAPKRRKRQKRVQESKETTKLQKIISTTKQLLLYLFILIILVAATYYGYKGLLWLNDWMNKVDEQRQRHPRRIR 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211458g00042 917 CDD NF-X1-zinc-finger 461 509 - -
Stsc211458g00042 917 CDD NF-X1-zinc-finger 276 324 - -
Stsc211458g00042 917 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 32 566 IPR034078 GO:0003700
Stsc211458g00042 917 CDD NF-X1-zinc-finger 329 376 - -
Stsc211458g00042 917 SUPERFAMILY RING/U-box 117 194 - -
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 538 547 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 339 357 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 682 698 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 471 489 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 393 412 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 745 763 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 444 462 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 639 649 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 234 251 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 Pfam NF-X1 type zinc finger 286 304 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 CDD NF-X1-zinc-finger 434 482 - -
Stsc211458g00042 917 MobiDBLite consensus disorder prediction 34 72 - -
Stsc211458g00042 917 CDD NF-X1-zinc-finger 669 710 - -
Stsc211458g00042 917 SMART znfxneu3 744 765 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 557 602 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 681 699 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 444 463 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 339 358 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 528 549 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 234 252 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 639 671 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 471 490 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 286 305 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 SMART znfxneu3 393 413 IPR000967 GO:0005634|GO:0008270
Stsc211458g00042 917 MobiDBLite consensus disorder prediction 833 862 - -
Stsc211458g00042 917 MobiDBLite consensus disorder prediction 56 72 - -
Stsc211458g00042 917 CDD NF-X1-zinc-finger 383 430 - -
Stsc211458g00042 917 CDD NF-X1-zinc-finger 222 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211458g00042 Stsc-Chr211458 294037 301171 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Stsc211458g00042 zf-NF-X1 0.0022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211458g00042 K15683 - gmx:100799540 1476.84