Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211458g00032 ATGGCATCCAGAGCCACTGGAACAGTGATTTGTTCTTGCATGATATGGCTCTTCCTTCTCTGCGCAACCATCGCCTTCCTTCAACTCAAGTTGGTAGATGACTCATCCCATCAAGCTTCCTCTAATGCAAAAATAACCACCACTCATCACTCCACAACCGGTGACCCAGATGGAGAAAATTTGGAGGGTGTCACACACAAGGTGTATTTTGATGTTCAGATTGGTGGAAAATTAGCGGGTCGCATAGTGATGGGCCTTTTTGGGAATACAGTTCCGAAAACTGTAGAAAACTTCAGAGCGCTTTGCACTGGAGAGAAGGGGGTTGGAAAAAGTGGGAAGCCTCTTTGCTATAAAGGGAGCGTATTCCATCGGATTATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACACGAGGTGATGGAAGAGGCGGAGAATCGATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGGTGAAGCATGATGGGCCAGGATACTTGTCAATGGCGAATTCTGGGCAAGACACCAACGGCTCCCAGTTTTTCATCACAACAGTAAGAACCAGCTGGTTGGATGGACGCCATGTTGTGTTTGGCAAGGTACTTTCAGGAATGGACATTTTGTACAAGATTGAAGCTGAAGGAAGTGAAAGTGGCACCCCAAAGAGTAAGGTTGTCATAATAGACAGTGGGGAATTAACTTCATGA 708 0.4562 MASRATGTVICSCMIWLFLLCATIAFLQLKLVDDSSHQASSNAKITTTHHSTTGDPDGENLEGVTHKVYFDVQIGGKLAGRIVMGLFGNTVPKTVENFRALCTGEKGVGKSGKPLCYKGSVFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKVKHDGPGYLSMANSGQDTNGSQFFITTVRTSWLDGRHVVFGKVLSGMDILYKIEAEGSESGTPKSKVVIIDSGELTS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211458g00032 235 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 67 233 - -
Stsc211458g00032 235 SUPERFAMILY Cyclophilin-like 64 233 IPR029000 -
Stsc211458g00032 235 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 70 230 IPR002130 GO:0000413|GO:0003755
Stsc211458g00032 235 CDD cyclophilin_ABH_like 66 231 - -
Stsc211458g00032 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 165 180 IPR002130 GO:0000413|GO:0003755
Stsc211458g00032 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Stsc211458g00032 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 192 IPR002130 GO:0000413|GO:0003755
Stsc211458g00032 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 101 IPR002130 GO:0000413|GO:0003755
Stsc211458g00032 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 208 IPR002130 GO:0000413|GO:0003755
Stsc211458g00032 235 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 69 232 IPR002130 GO:0000413|GO:0003755
Stsc211458g00032 235 FunFam Peptidyl-prolyl cis-trans isomerase 62 234 - -
Stsc211458g00032 235 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 117 134 IPR020892 GO:0003755|GO:0006457
Stsc211458g00032 235 Gene3D - 56 235 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211458g00032 Stsc-Chr211458 236707 239612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211458g00032 80 230 U-box Gene Family AT5G67530 43.137 8.71e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211458g00032 K01802 - gmx:100798499 376.326