Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211458g00031 ATGGCATCCAGAGCCACTGGAACAGTGATTTGTTCTTGCATGATATGGCTCTTCCTTCTCTGCGCAACCATCGCCTTCCTTCAACTCAAGTTGGTAGATGACTCATCCCATCAAGCTTCCTCTAATGCAAAAATAACCACCACTCATCACTCCACAACCGGTGACCCAGATGGAGAAAATTTGGAGGGTGTCACACACAAGGTGTATTTTGATGTTCAGATTGGTGGAAAATTAGCGGGTCGCATAGTGATGGGCCTTTTTGGGAATACAGTTCCGAAAACTGTAGAAAACTTCAGAGCGCTTTGCACTGGAGAGAAGGGGGTTGGAAAAAGTGGGAAGCCTCTTTGCTATAAAGGGAGCGTATTCCATCGGATTATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACACGAGGTGATGGAAGAGGCGGAGAATCGATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGGTGAAGCATGATGGGCCAGGATACTTGTCAATGGCGAATTCTGGGCAAGACACCAACGGCTCCCAGTTTTTCATCACAACAGTTGGATGGACGCCATGTTGTGTTTGGCAAGGTACTTTCAGGAATGGACATTTTGTACAAGATTGA 621 0.4589 MASRATGTVICSCMIWLFLLCATIAFLQLKLVDDSSHQASSNAKITTTHHSTTGDPDGENLEGVTHKVYFDVQIGGKLAGRIVMGLFGNTVPKTVENFRALCTGEKGVGKSGKPLCYKGSVFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKVKHDGPGYLSMANSGQDTNGSQFFITTVGWTPCCVWQGTFRNGHFVQD 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211458g00031 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 165 180 IPR002130 GO:0000413|GO:0003755
Stsc211458g00031 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 192 IPR002130 GO:0000413|GO:0003755
Stsc211458g00031 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Stsc211458g00031 206 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 101 IPR002130 GO:0000413|GO:0003755
Stsc211458g00031 206 Gene3D - 56 196 IPR029000 -
Stsc211458g00031 206 SUPERFAMILY Cyclophilin-like 64 188 IPR029000 -
Stsc211458g00031 206 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 69 206 IPR002130 GO:0000413|GO:0003755
Stsc211458g00031 206 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 70 186 IPR002130 GO:0000413|GO:0003755
Stsc211458g00031 206 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 117 134 IPR020892 GO:0003755|GO:0006457
Stsc211458g00031 206 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 61 194 - -
Stsc211458g00031 206 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 67 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211458g00031 Stsc-Chr211458 236485 239612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211458g00031 80 183 U-box Gene Family AT5G67530 49.524 1.88e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211458g00031 K01802 - gmx:100792649 287.345