Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211457g00046 ATGGAGATGGAGAATAGTATCCTGGGTCTTCTCAAACTTAGGATTAGGAGAGGCATTAATCTCGCAGTTCGAGATACTCCTTCTAGTACAAGTGATCCTTATGTTATTGTCAACTTAGGGGAACAGAAGCTCAAAACTAAGGTCGTTAAAGACACTTGTAATCCAAAGTGGAATGAAGAACTGACTCTTAATATTAAGGATATTAATACTCCAATAAATTTGACGATTTACGACAAAGACACCTTCTCGAACGACGACAGAATGGGTGAGGCAATTATAGAACTGAGGCCATATCTTCAGTGCCTGGTGATGGGGTTGGAAAGGCTTCCAGATGGGTGTGTGGTGAAGAGGATTCAGCCAAATAGGGTTAACTGCCTTTCTGAAGAGAGCTGTTGCGTTTGGCATGATGGGACTATAATCCAAGAGATGATATTGAGATTGAAAAATGTTGAGTGTGGTGAAATTGTTTGTGAAATTGAGTGGATTGATGTACCAGGTTGTAAGGGCTTATCAGAGCTACGACCTTAG 528 0.4091 MEMENSILGLLKLRIRRGINLAVRDTPSSTSDPYVIVNLGEQKLKTKVVKDTCNPKWNEELTLNIKDINTPINLTIYDKDTFSNDDRMGEAIIELRPYLQCLVMGLERLPDGCVVKRIQPNRVNCLSEESCCVWHDGTIIQEMILRLKNVECGEIVCEIEWIDVPGCKGLSELRP 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211457g00046 175 SMART C2_3c 10 107 IPR000008 -
Stsc211457g00046 175 Pfam C2 domain 10 97 IPR000008 -
Stsc211457g00046 175 Gene3D C2 domain 5 167 IPR035892 -
Stsc211457g00046 175 PRINTS C2 domain signature 27 39 IPR000008 -
Stsc211457g00046 175 PRINTS C2 domain signature 72 80 IPR000008 -
Stsc211457g00046 175 PRINTS C2 domain signature 51 64 IPR000008 -
Stsc211457g00046 175 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 7 168 IPR044562 -
Stsc211457g00046 175 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
Stsc211457g00046 175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 163 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211457g00046 Stsc-Chr211457 291187 292317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211457g00046 43 171 C2H2 Transcription Factor Family AT1G70790 60.305 1.12e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211457g00046 - - gmx:100788395 253.447