Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211457g00033 ATGGCTATGTTCTTCACGGAGTTGTATTCTTCTGAAACTCGTAAACTAATTGAACGACTCGTTAATTATATCATTTACAAGGGGACATTTCTACCACTGATTGTGCCACCGACAGTATATCAGGCTGGTCTTTGGTCAACATGGCTGACTGTGCTCTGCTCTTTAAAGATGTTTCAAGCATTGGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGTGACACCTTGGACATATCTTCGTGTATATTCAGCATTGTTATTCGTTTTCTTCATTGATGTTTTCTGGATAAGGTTTTGTCTGGGGGTATATAGAGGCGATGGGTCCCCTCTGCATCTGTTACTATTCTTTGAGCCTTTAAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTGCATGGATTTCAGTTGCTTGACATATGGCTTCCTCATTCAGCTTGCAACAGCAGTGATTGTCGAATGCCTAAACTGTTTAATACCCTAACATCAGGTGTCTTACTGGAATGGAAGGGAACTCTTATTCGGAACTTTGGGTTTTTCTTAGATATGGCAACTTTTTTAATGGCACTTGGCCATTACCTGTACATATGGCGTCTTCATGGGATGGCTTTTCATCTAGTAGACGCAGTGCTGTTTCTAAACATACGGGCCTTGCTTAGTGCAATTATAAATCGTATAAAAAGCTTTCATAGGTTAAGGATAGCTCTAGGAGCACTCAATGCTGCTCTTCCTGATGCGACAGATGAGGAGTTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAATCCATGGCTAAGGCAAAAAGGTTAAACTGCAATCACCTTTTCCATCTAGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAGATGTATACTTGTCCTACATGCCGAAAGCCTCTTTTCCCAGGCCGGTCAGAAAATGAAACAAATTCCAATGCAGGGGGAATATCTAGTGACGAGCAACTGGTACGCAATACAAATGCAGGACTGGATCGGCAGAACTCTGCCAGAAATACCATGCCTGCAGTATTGTATCCCAATCATATACCAAACACGGCAGAGAATGCCCCTTGGAGGGGTGCAGGACTGGACTCAGGCTGGTTGCATTCTTGGCCAAATCAGGGTATTGATGGAGCTGGTCCATCATCTACAACAATCAGAACAGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCAGCTAACTTCTGTGGGAGAAACCTATGCCCAGGGTGCCTTTGAAGATGCTTCCTGGAGCCTCTGGCCTATTAATCCCTCCCAGGCTTCTTCTAGTAATCCTACCATTTCTGCTGGTGAAAGGCTGCCAGTAGGAGCAGGTAGCTTACATAGAAGAANNNNNNNNNNTCTTCAAATGATAATATGGCAAATATTCTTGCTATGGCCGAAACTGTTCGGGAGGTTTTACCTCATATTCCAGATGACATAA 1458 0.4307 MAMFFTELYSSETRKLIERLVNYIIYKGTFLPLIVPPTVYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSVTPWTYLRVYSALLFVFFIDVFWIRFCLGVYRGDGSPLHLLLFFEPLSIAFETLQAILVHGFQLLDIWLPHSACNSSDCRMPKLFNTLTSGVLLEWKGTLIRNFGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRIKSFHRLRIALGALNAALPDATDEELRAYDDECAICRESMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFPGRSENETNSNAGGISSDEQLVRNTNAGLDRQNSARNTMPAVLYPNHIPNTAENAPWRGAGLDSGWLHSWPNQGIDGAGPSSTTIRTVGLGRVQMMMRQLTSVGETYAQGAFEDASWSLWPINPSQASSSNPTISAGERLPVGAGSLHRRXXXXLQMIIWQIFLLWPKLFGRFYLIFQMT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211457g00033 485 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 3 445 - -
Stsc211457g00033 485 MobiDBLite consensus disorder prediction 308 341 - -
Stsc211457g00033 485 FunFam E3 ubiquitin protein ligase RIN2 232 311 - -
Stsc211457g00033 485 Pfam Ring finger domain 257 301 IPR001841 -
Stsc211457g00033 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 310 IPR013083 -
Stsc211457g00033 485 SUPERFAMILY RING/U-box 245 307 - -
Stsc211457g00033 485 SMART ring_2 259 300 IPR001841 -
Stsc211457g00033 485 ProSiteProfiles Zinc finger RING-type profile. 259 301 IPR001841 -
Stsc211457g00033 485 MobiDBLite consensus disorder prediction 306 341 - -
Stsc211457g00033 485 CDD RING-H2_AMFR 257 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211457g00033 Stsc-Chr211457 208427 217278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211457g00033 14 342 C3H Transcription Factor Family AT3G16090 27.350 1.20e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211457g00033 K10636 - gmx:100819656 754.592