Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211457g00011 ATGGTTATAAAGCCTGGCCCTGTACTGGACTTCCTTTGTGATAATCAAAATGTGAGGAATTCGGACTATGGTCGTATTGATTGGACCAAGGCAAAAAGAGTTCGGGTTAATAATATGGAGTACAAAATCACTAGACTCAGTGAGAATCCCTGCAGGTCTCAACTGACAATTGAAATCACAGTTTATGATTACTTTAAACGCCATAAGAACATTGAATTGCGCCATGCTGATTTTCCATGCATCAATGTTGGCAAGCCAAGGCGCCCAACTTATTTTCCACTGGAGCTATGCACCTTGATCTCATTGCAGAGGTACACCAAGGCTTTGACAAATTTGCAAAGGTCTCAATTAGTTGAAATGTCAAGGCAAAAGCCCAATAAAAGGAAAGAAGAATTGGCTGATTCCTTAAGAAACAGCAGATATGGCAATGAGCCTATGCTTCGCTCTTCTAGGATTACCATTGAATCTGATTTTACTCGGGTTGAAGGCCGAATTCTGCAGCCTCCAAAACTTGGTGTTGGAAATGGGGAGGACTTCATTCCAAGGGAAGGGCGCTGGAATTTCAACAATAAGAAACTACTTAGACCTGTGAGTCTTGAGCGTTGGGCTGTTGTAAACTTCTCAGCTCGCTGTGACATGCGATTTCTGTGCGATACCATAAAAAAGTCGCATAATTCCCCATTTCAAGTATTCAAAGAGGATAGTCGTTCAATACGCGATCCAGCGCCTGTTAGGGTGGAAAAGATGCATCAACTTGTAATGTCCAAGTTGCCTCCCGGCCCTCCCGGCCCTCAGCTTCTGTTGTGTATTCTTCCAGAGAGAAAAAATTCTGAAATTTATGGACCTTGGAAAAGAAGAAATCTTGTTGATGAAGGTGTTGCAACACAGTGTATTGCACCAACAAAAATCAATGATCAGTATATTACTAATGTTCTCCTGAAAATTAATGCAAAGCTTGGTGGAATGAATTCCATTCTGTCAATGGAGCGTTCTCCTTCCATACCTTTACTTCATAATCAACCTACATTAATTCTTGGTATGGATGTTTCTCATGGAGCTCCTGGAAGATCAGATGCGCCATCTATTGCCGCGGTTGTGAGTTCAAGGTCTTGGCCTTCAATATCCTGCTATAGAGCTGCGGTTCGGACTCAGTCTCCAAGAGTTGAGATGATTCAGTCTTTATTTAAGCCAGTTCCTTCTGATACTGGTAATAATGATGAAGGTATCATCAGGGAGCTGCTTATGGACTTCTATGAAAGTTCAAAAAAAACGAAGCCTCAGCAAATTATAATTTTCCGGGATGGAGTGAGTGAATCACAGTTCATCAAGGTGTTGAATGAAGAGTTAGTTCCAATCATAGAGAAACTGTTGTTGACAGCCAAATCTGTCATTCCAAGTACAATCTGTTGA 1410 0.4149 MVIKPGPVLDFLCDNQNVRNSDYGRIDWTKAKRVRVNNMEYKITRLSENPCRSQLTIEITVYDYFKRHKNIELRHADFPCINVGKPRRPTYFPLELCTLISLQRYTKALTNLQRSQLVEMSRQKPNKRKEELADSLRNSRYGNEPMLRSSRITIESDFTRVEGRILQPPKLGVGNGEDFIPREGRWNFNNKKLLRPVSLERWAVVNFSARCDMRFLCDTIKKSHNSPFQVFKEDSRSIRDPAPVRVEKMHQLVMSKLPPGPPGPQLLLCILPERKNSEIYGPWKRRNLVDEGVATQCIAPTKINDQYITNVLLKINAKLGGMNSILSMERSPSIPLLHNQPTLILGMDVSHGAPGRSDAPSIAAVVSSRSWPSISCYRAAVRTQSPRVEMIQSLFKPVPSDTGNNDEGIIRELLMDFYESSKKTKPQQIIIFRDGVSESQFIKVLNEELVPIIEKLLLTAKSVIPSTIC 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211457g00011 469 CDD PAZ_argonaute_like 5 100 - -
Stsc211457g00011 469 SUPERFAMILY PAZ domain 2 141 IPR036085 GO:0005515
Stsc211457g00011 469 SUPERFAMILY Ribonuclease H-like 262 455 IPR012337 -
Stsc211457g00011 469 SMART Piwi_a_2 266 468 IPR003165 GO:0003676
Stsc211457g00011 469 Pfam Piwi domain 267 456 IPR003165 GO:0003676
Stsc211457g00011 469 Gene3D paz domain 1 105 - -
Stsc211457g00011 469 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 454 - -
Stsc211457g00011 469 Gene3D - 165 327 - -
Stsc211457g00011 469 ProSiteProfiles PAZ domain profile. 32 101 IPR003100 GO:0005515
Stsc211457g00011 469 Pfam PAZ domain 34 117 IPR003100 GO:0005515
Stsc211457g00011 469 Gene3D - 333 466 IPR036397 GO:0003676
Stsc211457g00011 469 ProSiteProfiles Piwi domain profile. 266 469 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211457g00011 Stsc-Chr211457 65584 68383 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211457g00011 3 452 Eukaryotic Initiation Factors Gene Family AT1G48410 34.086 1.65e-70 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211457g00011 K11593 - pop:7486850 596.275