Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211457g00009 ATGGATTCTTCAGAAGCACTGCCACCTCCACCACCAGTCATTCCTGCAAATTTTGTTCCGATGAAGGCGCATAAAGCGGGGAAAGAAGAATCTCAGCCAAAGTTCTTGCCTATGGTTAGAAGAGGCGTTGGAACCAAAGGACAGAAGATTCAGCTGCTAAGTAACCATTTCAAAGTTGGAGTGGGCATAAAAGATGGTTTCTTCTACCATTATAGTGTTGCTATGTCTTATGAGGATGGTAATCCGGTTGAAGCTAAGGGAATCGGCCGAAAGGTCCTTGATAAAGTTTATGAAACATATGATGAACTAAAAAACAAGAACTTTGCATATGATGGTGAGAAAAGCTTATTCACTCTTGGCTCTCTTGAAGAGAACAAGATGGAGTTCACTGTTGTGCTGGAGGATCTTACATCAAGGAGGGCTGGAAGGAGTGATGCTGGTCTTGATAGCCCTACAGATGGAGAGAAAAAGAGAATGAGGCGCCAATCTCAGTCCAAGACTATCAAGGTGGTGATCAGTTATGCAGCCAAGATTCCAATTCAAGCAATCGCAGATGCGTTGCGCGGACAGGATTCTGAGCACTTCCAGGAGGCATTGAGGGTCCTTGACATCATCCTGAGGCAGCATGCAGCAAAGCAGGGCTGTCTCCTCGTTCGCCAATCCTTCTTCCATGACAATCCAAGGAATTATACTGACCTTGGAGGTGGTGTTCAAGGCTGCCGCGGTTTCCATTCAAGTTTCCGTCCCACTCAAGGAGGTTTATCTCTGAATATTGATGTGTCAACTACTATGGTTGTAAAGCCTGGTCCTGTACTGGACTTCCTTTGTGATAATCAAAATGTGAGGCATCCAAACCTTATTGATTGGACCAAGGCAAAAAGGGTACTGAAAAGCCTCAGAATCAGGGTTAACAATATGGAGTACAAAATCAGTGGACTCAGTGAGAATCCCTGCAGGTCTCAACTGTTTTCATTGAAACATGGGAAGGATGAAAATGGTGAACCTAGGACAATTGAAATCACAGTTTATGATTACTTTAAACGCCATAAGAACATTGAATTGCGCCATGCTGATTTTCCATGCATCAATGTTGGCAAGCCACGGCGCCCGACTTATTTTCCAGTGGAGCTATGCACCTTGATCTCATTGCAGAGGTACACCAAGTCTTTGACAAATTTGCAAAGGGCTCAGTTAGTTGAGAAGTCAAGGCAAAAGCCCAATGAAAGGAAAGAAGCTTTGTCTGGTTCCTTAAGAAACAGCAGATATGGAAATGAGCCTATGCTTCGCTCTGCTGGGATTACCATTGAATCTGATTTTACTCGGGTTGAAGGCCGAATTCTGCCACCTCCAAAACTTGTAGTTGGAAAAGGGGAGGACTTCATTCCAAGGGGAGGGCGCTGGAATTTCAACAATAAGCAATTAGTTAGGCCTGTGAGTCTTGAGCGTTGGGCTGTTGTAAACTTCTCAGCTCGCTGTGACACGCGATTTCTGTGCACTACTATCAAGAAATGTGCTGAAATGAAGGGAATTCGCATAAACCCACCATTTCAAGTATTCGAAGAGGATGGTCGTGCAAAACGCGATCCGGCGCCTGTTAGAGTCGAAAAGATGTATCAATATGTAAAGTCCAAGTTGCCTGGTGCCCCTCAGCTTCTGTTGTGCATTCTTCCAGAGAGAAAGAATTCTGATATTTATGGACCTTGGAAAAGAAGAAATCTTGCTGATGAAGGTGTTGCAACACAGTGCATTGCACCAACAAAAATCAATGATCAGTATATTACTAATGTTCTCCTGAAAATTAATGCCAAGCTTGGTGGAATGAATTCCTTGCTGTCAATAGAGCGTTCTCCTTCCATACCTTTACTTCGTAATGAAGCTACCTTAATTCTTGGTATGGATGTTTCTCATGGAGCTCCAGGCAGATCGGATGCACCATCTATTGCTGCGGTTGTGAGTTCAAGGGCTTGGCCTTCAATATCCTGCTACAAAGCCGCGGTTCGGACTCAGTCACCAAGAGTTGAGATGATTCAGTCTTTATTTAAGCCAGTTCCTTCTGATACTGGTAATAAAGACGAAGGTATCATCAGGGAGCTGATTATGGACTTCTATGAAACTTCAAATCAAAGGAAGCCTCAGCAAATTATAATTTTCAGAGATGGAGTGAGTGAATCACAGTTCATCAAGGTGTTGAATGAAGAGTTAGTTCCAATCATAGAGACATGCAAATATCTTGATGAGAAGTGGTGTCCCAAGTTCACTTTTATTGTTGCTCAGAAGAATCATCATACTAAGTTCTTTAAGGACAATGCTCCGAATAATGTTCCACCAGGAACTGTTGTTGACACCCAAATCTGTCATCCCAAGAACAATGATTTTTACATGTGTGCTCATGCTGGGATGATTGGAACAACTCGACCAACTCATTACCAAGTTTTGCATGATGAAATTGGGTTCTCTGCTGATGATTTGCAAGAATTAGTTCATTTTCTTTCTTATGTCTACCAAAGGAGCACCACTGCCATATCAATAGTTGCTCCAATTTGCTATGCTCACTTAGCAGCTGCCCAAATGGGACAATTCATCAAGTATGATGATCTATCTGAGACTTCTTCAAGTCGCGGCGGAACTACAATTTCTAGTGCAGTTCATGTACCTCAGTTACCCCTTCTTCACAAAGATGTCGCGAACTCAATGTTCTTTTGTTAA 2706 0.4294 MDSSEALPPPPPVIPANFVPMKAHKAGKEESQPKFLPMVRRGVGTKGQKIQLLSNHFKVGVGIKDGFFYHYSVAMSYEDGNPVEAKGIGRKVLDKVYETYDELKNKNFAYDGEKSLFTLGSLEENKMEFTVVLEDLTSRRAGRSDAGLDSPTDGEKKRMRRQSQSKTIKVVISYAAKIPIQAIADALRGQDSEHFQEALRVLDIILRQHAAKQGCLLVRQSFFHDNPRNYTDLGGGVQGCRGFHSSFRPTQGGLSLNIDVSTTMVVKPGPVLDFLCDNQNVRHPNLIDWTKAKRVLKSLRIRVNNMEYKISGLSENPCRSQLFSLKHGKDENGEPRTIEITVYDYFKRHKNIELRHADFPCINVGKPRRPTYFPVELCTLISLQRYTKSLTNLQRAQLVEKSRQKPNERKEALSGSLRNSRYGNEPMLRSAGITIESDFTRVEGRILPPPKLVVGKGEDFIPRGGRWNFNNKQLVRPVSLERWAVVNFSARCDTRFLCTTIKKCAEMKGIRINPPFQVFEEDGRAKRDPAPVRVEKMYQYVKSKLPGAPQLLLCILPERKNSDIYGPWKRRNLADEGVATQCIAPTKINDQYITNVLLKINAKLGGMNSLLSIERSPSIPLLRNEATLILGMDVSHGAPGRSDAPSIAAVVSSRAWPSISCYKAAVRTQSPRVEMIQSLFKPVPSDTGNKDEGIIRELIMDFYETSNQRKPQQIIIFRDGVSESQFIKVLNEELVPIIETCKYLDEKWCPKFTFIVAQKNHHTKFFKDNAPNNVPPGTVVDTQICHPKNNDFYMCAHAGMIGTTRPTHYQVLHDEIGFSADDLQELVHFLSYVYQRSTTAISIVAPICYAHLAAAQMGQFIKYDDLSETSSSRGGTTISSAVHVPQLPLLHKDVANSMFFC 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211457g00009 901 Gene3D paz domain 262 386 - -
Stsc211457g00009 901 Pfam N-terminal domain of argonaute 48 206 IPR032474 -
Stsc211457g00009 901 ProSiteProfiles PAZ domain profile. 308 382 IPR003100 GO:0005515
Stsc211457g00009 901 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 33 864 - -
Stsc211457g00009 901 SMART DUF1785_2 216 268 IPR014811 -
Stsc211457g00009 901 Pfam PAZ domain 272 398 IPR003100 GO:0005515
Stsc211457g00009 901 SUPERFAMILY PAZ domain 263 422 IPR036085 GO:0005515
Stsc211457g00009 901 FunFam Protein argonaute 7 263 386 - -
Stsc211457g00009 901 MobiDBLite consensus disorder prediction 142 164 - -
Stsc211457g00009 901 Pfam Piwi domain 552 862 IPR003165 GO:0003676
Stsc211457g00009 901 ProSiteProfiles Piwi domain profile. 551 862 IPR003165 GO:0003676
Stsc211457g00009 901 Pfam Argonaute linker 2 domain 408 452 IPR032472 -
Stsc211457g00009 901 CDD Piwi_ago-like 426 856 IPR045246 -
Stsc211457g00009 901 Pfam Argonaute linker 1 domain 218 266 IPR014811 -
Stsc211457g00009 901 Coils Coil 296 316 - -
Stsc211457g00009 901 SMART Piwi_a_2 551 862 IPR003165 GO:0003676
Stsc211457g00009 901 FunFam Protein argonaute 3 619 901 - -
Stsc211457g00009 901 SUPERFAMILY Ribonuclease H-like 535 860 IPR012337 -
Stsc211457g00009 901 CDD PAZ_argonaute_like 268 381 - -
Stsc211457g00009 901 Gene3D - 446 612 - -
Stsc211457g00009 901 Gene3D - 619 901 IPR036397 GO:0003676
Stsc211457g00009 901 SMART PAZ_2_a_3 269 407 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211457g00009 Stsc-Chr211457 45523 50364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211457g00009 40 901 Eukaryotic Initiation Factors Gene Family AT5G43810 35.229 3.40e-163 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211457g00009 K11593 - pop:7486850 1266.52